Skip to content

Commit

Permalink
Upgrade clear linux, conda, and VEP in Dockerfile
Browse files Browse the repository at this point in the history
  • Loading branch information
ckandoth authored Jul 20, 2020
1 parent e1f5744 commit 550be85
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions Dockerfile
Original file line number Diff line number Diff line change
@@ -1,21 +1,21 @@
FROM clearlinux:latest AS builder

# Install a minimal versioned OS into /install_root, and bundled tools if any
ENV CLEAR_VERSION=32820
ENV CLEAR_VERSION=33490
RUN swupd os-install --no-progress --no-boot-update --no-scripts \
--version ${CLEAR_VERSION} \
--path /install_root \
--statedir /swupd-state \
--bundles os-core-update,which

# Download and install conda into /usr/bin
ENV MINICONDA_VERSION=py38_4.8.2
ENV MINICONDA_VERSION=py37_4.8.3
RUN swupd bundle-add --no-progress curl && \
curl -sL https://repo.anaconda.com/miniconda/Miniconda3-${MINICONDA_VERSION}-Linux-x86_64.sh -o /tmp/miniconda.sh && \
sh /tmp/miniconda.sh -bfp /usr

# Use conda to install remaining tools/dependencies into /usr/local
ENV VEP_VERSION=99.2 \
ENV VEP_VERSION=100.3 \
HTSLIB_VERSION=1.9 \
BCFTOOLS_VERSION=1.9 \
SAMTOOLS_VERSION=1.9
Expand Down

0 comments on commit 550be85

Please sign in to comment.