v3.3.1 Cenote-Taker 3: Majestic Gull Attack
Changes from v3.3.0
:
- Added argument
--max_dtr_assess
. Users can enter a maximum contig length to evaluate DTRs (default 1000000). Practically, long DTR-containing contigs are probably bacterial chromosomes and should be evaluated for prophages and pruned. Since DTR-containing contigs do not get pruned, this was preventing some bacterial chromosome assemblies from getting pruning treatment. #6 - Fixed
hhpred_to_table.py
gene_name variable parsing, which previously incorrectly used .strip() function. - Fixed location of MMSEQS_outdir in
get_ct3_dbs
command to avoid error. - For read-mapping,
--seqtech
now effectsminimap2
settings
What's Changed
Full Changelog: v3.3.0...v3.3.1