Merge pull request #65 from n-kall/fix-gradient-calc #358
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| # Workflow derived from https://github.com/r-lib/actions/tree/master/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| on: | |
| push: | |
| branches: [main, master, development] | |
| pull_request: | |
| branches: [main, master, development] | |
| name: R-CMD-check | |
| jobs: | |
| R-CMD-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'devel', rtools: ''} | |
| - {os: macOS-latest, r: 'release', rtools: ''} | |
| - {os: windows-latest, r: 'devel', rtools: '43'} | |
| - {os: windows-latest, r: 'release', rtools: '43'} | |
| - {os: ubuntu-20.04, r: 'devel', rtools: ''} | |
| - {os: ubuntu-20.04, r: 'release', rtools: ''} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| R_KEEP_PKG_SOURCE: yes | |
| NOT_CRAN: true | |
| steps: | |
| - name: cmdstan env vars | |
| run: | | |
| echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: n1hility/cancel-previous-runs@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2.8.7 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| rtools-version: ${{ matrix.config.rtools }} | |
| use-public-rspm: true | |
| - uses: r-lib/actions/setup-pandoc@v2.8.7 | |
| # packages that are needed for R CMD CHECK | |
| - uses: r-lib/actions/setup-r-dependencies@v2.8.7 | |
| with: | |
| cache-version: 3 | |
| extra-packages: | | |
| XML | |
| stan-dev/cmdstanr | |
| topipa/iwmm | |
| rcmdcheck | |
| rstan | |
| checkmate | |
| jsonlite | |
| posterior | |
| processx | |
| R6 | |
| BH | |
| RcppEigen | |
| StanHeaders | |
| RcppParallel | |
| withr | |
| testthat | |
| rmarkdown | |
| knitr | |
| any::XML | |
| any::textshaping | |
| - name: Install cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = 2) | |
| shell: Rscript {0} | |
| - name: check | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") | |
| shell: Rscript {0} |