Merge branch 'smalton/DOR-956-demux-aligned' into 'master'

[DOR-956] Demux aligned reads Closes DOR-956 See merge request machine-learning/dorado!1274
nanoporetech · Nov 21, 2024 · 631e94c · 631e94c
2 parents 35da003 + 7b303a3
commit 631e94c
Showing 1 changed file with 5 additions and 2 deletions.
diff --git a/dorado/cli/demux.cpp b/dorado/cli/demux.cpp
@@ -291,8 +291,11 @@ int demuxer(int argc, char* argv[]) {
             barcode_kits::add_custom_barcode_kit(kit_name, kit_info);
         }
         client_info->contexts().register_context<const demux::BarcodingInfo>(barcoding_info);
-        auto trimmer = pipeline_desc.add_node<TrimmerNode>({demux_writer}, 1);
-        pipeline_desc.add_node<BarcodeClassifierNode>({trimmer}, demux_threads);
+        auto current_node = demux_writer;
+        if (!no_trim) {
+            current_node = pipeline_desc.add_node<TrimmerNode>({demux_writer}, 1);
+        }
+        pipeline_desc.add_node<BarcodeClassifierNode>({current_node}, demux_threads);
     }
 
     // Create the Pipeline from our description.