Skip to content

Issues: nanoporetech/modkit

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

130 Open 227 Closed
130 Open 227 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

find-motifs stuck in loop?
#360 opened Jan 31, 2025 by Ge0rges
Final CpG of read detection question Looking for clarification on inputs and/or outputs
#359 opened Jan 29, 2025 by benjamin-bfeng
3
modkit dmr pair: sampled 0 a records and 0 b records troubleshooting workflow and data preparation questions
#358 opened Jan 29, 2025 by leetaiyi
2
threshold modification in modkit pileup question Looking for clarification on inputs and/or outputs
#357 opened Jan 29, 2025 by baibhav-bioinfo
1
Feature Request: Add --partition-tag option to "modkit extract calls" enhancement New feature or request
#356 opened Jan 28, 2025 by zaka-edd
2
Haplotagged CRAM and bedmethyl question Looking for clarification on inputs and/or outputs
#355 opened Jan 27, 2025 by umranyaman
4
Dorado for basecalling vs modification detection question Looking for clarification on inputs and/or outputs
#354 opened Jan 27, 2025 by baibhav-bioinfo
2
fetching sequence failed, FASTA read interval was out of bounds troubleshooting workflow and data preparation questions
#353 opened Jan 26, 2025 by TKsh6
1
modkit bedmethyl merge bug bug Something isn't working needs-attention Requires follow up from developers troubleshooting workflow and data preparation questions
#350 opened Jan 17, 2025 by paulinor42
3
find-motifs --contig failed to parse any bedmethyl records needs-attention Requires follow up from developers
#349 opened Jan 17, 2025 by Ge0rges
2
Quality of life suggestion for motif bed enhancement New feature or request
#348 opened Jan 16, 2025 by Ge0rges
2
How to Filter Sites for High-Confidence Modifications? question Looking for clarification on inputs and/or outputs
#346 opened Jan 16, 2025 by evans-ZH
5
color coding in sample-props bug Something isn't working
#345 opened Jan 15, 2025 by GregorD96
1
assess the precision of the 4mC ratio question Looking for clarification on inputs and/or outputs
#344 opened Jan 15, 2025 by hannan666666
2
Error during merging bedmethyl files troubleshooting workflow and data preparation questions
#342 opened Jan 14, 2025 by ralanany
1
I have some questions regarding the bed methyl file, would you help? question Looking for clarification on inputs and/or outputs
#340 opened Jan 14, 2025 by ralanany
1
--ref <REFERENCE_FASTA> is to select the reference genome or transcriptome question Looking for clarification on inputs and/or outputs
#338 opened Jan 10, 2025 by Tang-pro
2
Feature request enhancement New feature or request
#337 opened Jan 9, 2025 by kamaloxfordpathology
2
Samtools code for modkit repair documentation Improvements or additions to documentation
#336 opened Jan 9, 2025 by sandraionescu
1
failed to get modbase info for record 6bcfdea5-e9eb-4fc9-a72e-81744a77df80, Skipped: AUX data not found question Looking for clarification on inputs and/or outputs
#335 opened Jan 8, 2025 by Tang-pro
5
FEATURE REQUEST: Extract/Calls reports number of CpG's covered in the sample
#332 opened Jan 6, 2025 by ethan-mcq
3
no m6A sites found in results question Looking for clarification on inputs and/or outputs troubleshooting workflow and data preparation questions
#331 opened Jan 4, 2025 by baibhav-bioinfo
1
Thank you, for the amazing tool, I have 9 bedmethyl files(4 control and 5 disease cases), these files generated from modkit tool. I have some questions question Looking for clarification on inputs and/or outputs
#328 opened Jan 2, 2025 by ralanany
1
Clarification on Modkit DMR Pair Results and Validate Accuracy question Looking for clarification on inputs and/or outputs
#327 opened Dec 31, 2024 by BrendanBeahan
4
Out of memory in modkit find-motifs troubleshooting workflow and data preparation questions
#323 opened Dec 27, 2024 by hannan666666
4
ProTip! Follow long discussions with comments:>50.