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> hcm = hemibrain_compartment_metrics(neurons, + resample = NULL, + just.leaves = TRUE, # just look how much the leaves of skeletons overlap, quicker (default) + delta = 5) > hcm bodyid pre post upstream downstream status statusLabel cropped 1702323386 1702323386 371 4753 4753 2165 Traced Roughly traced FALSE 2068966051 2068966051 104 1619 1619 683 Traced Leaves TRUE 2069311379 2069311379 11 466 466 61 Traced Leaves TRUE 1702305987 1702305987 612 2116 2116 2487 Traced Roughly traced FALSE 5812996027 5812996027 232 714 714 1595 Traced Roughly traced FALSE name type cellBodyFiber voxels 1702323386 <NA> <NA> <NA> 1600207841 2068966051 <NA> <NA> <NA> 314685458 2069311379 <NA> <NA> <NA> 147761931 1702305987 lLN2R_b(Regional)_R lLN2R_b AVM02 806128911 5812996027 lLN12b_R lLN12B AVM02 368364508 notes soma total.outputs total.inputs 1702323386 <NA> FALSE 2165 4753 2068966051 <NA> FALSE 683 1619 2069311379 <NA> FALSE 61 466 1702305987 AL-LN2L (Tanaka et al. JCN 2012) TRUE 2487 2116 5812996027 <NA> TRUE 1595 714 axon.outputs dend.outputs axon.inputs dend.inputs total.outputs.density 1702323386 0 807 0 1394 0.36084107 2068966051 256 393 684 935 0.23093998 2069311379 34 13 184 116 0.05028509 1702305987 0 2003 5 1723 0.61605712 5812996027 643 952 120 591 0.99917822 total.inputs.density axon.outputs.density dend.outputs.density 1702323386 0.7921836 0.00000000 0.40420018 2068966051 0.5474258 0.21063130 0.23878459 2069311379 0.3841451 0.07703632 0.04169616 1702305987 0.5241564 0.00000000 0.63396725 5812996027 0.4472810 1.86887198 0.80502580 axon.inputs.density dend.inputs.density total.length axon.length 1702323386 0.0000000 0.6982095 5999.871 0.1357645 2068966051 0.5627805 0.5681007 2957.478 1215.3939068 2069311379 0.4169024 0.3720580 1213.083 441.3502511 1702305987 0.3576827 0.5453448 4036.963 13.9788682 5812996027 0.3487786 0.4997587 1596.312 344.0578089 dend.length pd.length segregation_index 1702323386 1996.5355 28.282945 NA 2068966051 1645.8349 26.161610 NA 2069311379 311.7793 33.592591 NA 1702305987 3159.4692 2.623717 NA 5812996027 1182.5708 19.392830 NA
The text was updated successfully, but these errors were encountered:
In the example for this function, this step fails:
hist(hcm$overlap_locality, breaks = 100)
Error in hist.default(hcm$overlap_locality, breaks = 100) : 'x' must be numeric Calls: hist -> hist.default
Sorry, something went wrong.
That's because there is no column called overlap_locality.
overlap_locality
remove broken step in example
e371b5a
* see #27
alexanderbates
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The text was updated successfully, but these errors were encountered: