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read.neuronlistfh fails on Windows #268

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jefferis opened this issue Dec 4, 2015 · 0 comments
Closed

read.neuronlistfh fails on Windows #268

jefferis opened this issue Dec 4, 2015 · 0 comments
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jefferis commented Dec 4, 2015

Noticed by Dana Galili

> dps<-read.neuronlistfh("http://flybrain.mrc-lmb.cam.ac.uk/si/nblast/flycircuit/dpscanon.rds",
    localdir=getOption('flycircuit.datadir'))

trying URL 'http://flybrain.mrc-lmb.cam.ac.uk/si/nblast/flycircuit/dpscanon.rds'
Content type 'application/octet-stream' length 4727220 bytes (4.5 MB)
downloaded 4.5 MB

Error in readRDS(tmpFile) : 
  embedded nul in string: 'FruMARCM-M001901\0\004\0\t\0\0\0'

Problem is that we need to set the download mode to binary on Windows.
@jefferis jefferis added the bug label Dec 4, 2015
jefferis added a commit that referenced this issue Jan 28, 2023
@jefferis
Fixing NEWS parse error on linux
94d1d1d 
* missed locally and by winbuilder
* seems like all text must start with a * 

Problems with news in 'NEWS':
  Cannot process chunk/lines:
    It also updates URLs to point to nat's new home organisation on GitHub
    (https://github.com/natverse/).
  Cannot process chunk/lines:
    This release includes some bug fixes and significantly improved online package
  Cannot process chunk/lines:
    This is tagged as a major release because of a change in behaviour that (by
  Cannot process chunk/lines:
    default) suppresses interactive rgl windows when running in batch
    (non-interactive) mode. See ?nat "rgl Package" section for details.
      defaulting to rgl's NULL mode display. This should help run nat in batch mode
      situations including knitr runs, the CRAN build server etc. (#272)
    * Add summary.neuron(list) functions to calculate tree statistics such as number
     of nodes and cable length for neurons/neuronlists (#269)
    * Automate progress bar in nlapply - this will always show in interactive mode
      when there are more than 10 neurons being processed. (#271)
    * Fix bug in c.neuronlist when combining more than 2 neuronlists (#270)
    * Fix bug in read.neuronlistfh on Windows (#268)
    * Fix bug when constructing an ngraph with a single node (#267)
    * Fix bug in `[<-.neuronlist` when assigning a whole data.frame using (#256)
    * Fix bug in bounding box with input = "bounds" (#273)
    * Documentation improvements (especiall package overview - see ?nat)
    * nat will only activate an rgl display in interactive mode, otherwise
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