fix: resolve the bug of list-hashes subcmd

[quake]

What problem does this PR solve?

resolve the bug of list-hashes subcmd always listing the bundled data, this bug was introduced by this PR: #3778

Check List

• Manual test (add detailed scripts or steps below)

./ckb list-hashes
# Generated by: ckb list-hashes

./ckb list-hashes -b
# Generated by: ckb list-hashes -b

Release note

Title Only: Include only the PR title in the release note.

[eval-exec]

Do we need to improve the tests here? I'd like to work on this. @quake

ckb/util/app-config/src/tests/cli.bats

Lines 54 to 65 in a338033

	function list_hashes { #@test
	run _list_hashes
	[ "$status" -eq 0 ]
	assert_output --regexp "\# Spec: ckb[_]?[a-z]*.*\[ckb[_]?[a-z]*\].*spec_hash = \"0x[0-9a-z]*\""
	}
	function list_bundle_hashes { #@test
	run _list_bundle_hashes
	[ "$status" -eq 0 ]
	assert_output --regexp "\# Spec: ckb.*\[ckb\].*spec_hash = \"0x[0-9a-z]*\""
	}