Code

Compute pairwise distances#278

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Merged

lochhh merged 26 commits intomainneuroinformatics-unit/movement:mainfrom distance-metricsneuroinformatics-unit/movement:distance-metricsCopy head branch name to clipboardOct 29, 2024

+540-3

Commits

Commits on Oct 29, 2024

• Draft inter-individual distances

  lochhh

  committed
  6b786ab

• Return vector norm in compute_interindividual_distances

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  502c511

• Add compute_interkeypoint_distances

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  16817d8

• Refactor pairwise distances tests

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  9fa40e1

• Use scipy.spatial.distance.cdist

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• Add examples to docstrings

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  a02f208

• Rename variables

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  4f14883

• Update test function args + fix indentation

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  aea33e1

• Handle scalar and 1d dims

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  3c24780

• Handle missing core_dim

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  c603be8

• Refactor cdist and tests

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  7570bb1

• Fix docstrings

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  092f27a

• Reorder functions + cleanup docs

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  85720be

• Reduce pairwise distances functions

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• Mention examples of available distance metrics

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  717e099

• Update docstrings

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• Require pairs in compute_pairwise_distances

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• Raise error if there are no pairs to compute distances for

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• Rename core_dim to labels_dim

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• Spell out expected pairs in test

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• Merge old kinematics file changes into new

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• Rename core_dim to labels_dim in tests

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  bb84571

• Validate dims in compute_pairwise_distances

  lochhh

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  7cf8ba6

• Apply suggestions from code review

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  lochhh

  and

  niksirbi

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  b499f1e

• Apply suggestions from code review

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  lochhh

  and

  niksirbi

  committed
  8b3b5b1

• [pre-commit.ci] auto fixes from pre-commit.com hooks

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  lochhh

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  d1ca2cd