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remove trained models #275

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merged 4 commits into from
Feb 27, 2024
Merged

remove trained models #275

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055a89c
remove trained models
satra Feb 27, 2024
4994638
fix docker syntax
satra Feb 27, 2024
9c75e34
update precommit checks
satra Feb 27, 2024
9fac186
change hyphenation
satra Feb 27, 2024
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2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -28,4 +28,4 @@ repos:
rev: v2.2.6
hooks:
- id: codespell
exclude: ^(nobrainer/_version\.py|versioneer\.py)$
exclude: ^(nobrainer/_version\.py|versioneer\.py|pyproject\.toml|CHANGELOG\.md)$
17 changes: 2 additions & 15 deletions docker/cpu.Dockerfile
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@@ -1,21 +1,8 @@
FROM tensorflow/tensorflow:2.14.0-jupyter
RUN curl -sSL http://neuro.debian.net/lists/focal.us-nh.full | tee /etc/apt/sources.list.d/neurodebian.sources.list \
&& export GNUPGHOME="$(mktemp -d)" \
&& echo "disable-ipv6" >> ${GNUPGHOME}/dirmngr.conf \
&& (apt-key adv --homedir $GNUPGHOME --recv-keys --keyserver hkp://pgpkeys.eu 0xA5D32F012649A5A9 \
|| { curl -sSL http://neuro.debian.net/_static/neuro.debian.net.asc | apt-key add -; } ) \
&& apt-get update \
&& apt-get install -y git-annex-standalone git \
&& rm -rf /tmp/*
FROM tensorflow/tensorflow:2.15.0.post1-jupyter
COPY [".", "/opt/nobrainer"]
RUN cd /opt/nobrainer \
&& sed -i 's/tensorflow >=/tensorflow-cpu >=/g' setup.cfg
RUN python3 -m pip install --no-cache-dir /opt/nobrainer datalad datalad-osf
RUN git config --global user.email "neuronets@example.com" \
&& git config --global user.name "Neuronets maintainers"
RUN datalad clone https://github.com/neuronets/trained-models /models \
&& cd /models && git-annex enableremote osf-storage \
&& datalad get -s osf-storage .
RUN python3 -m pip install --no-cache-dir /opt/nobrainer
ENV LC_ALL=C.UTF-8 \
LANG=C.UTF-8
WORKDIR "/work"
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17 changes: 2 additions & 15 deletions docker/gpu.Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,20 +1,7 @@
FROM tensorflow/tensorflow:2.14.0-gpu-jupyter
RUN curl -sSL http://neuro.debian.net/lists/focal.us-nh.full | tee /etc/apt/sources.list.d/neurodebian.sources.list \
&& export GNUPGHOME="$(mktemp -d)" \
&& echo "disable-ipv6" >> ${GNUPGHOME}/dirmngr.conf \
&& (apt-key adv --homedir $GNUPGHOME --recv-keys --keyserver hkp://pgpkeys.eu 0xA5D32F012649A5A9 \
|| { curl -sSL http://neuro.debian.net/_static/neuro.debian.net.asc | apt-key add -; } ) \
&& apt-get update \
&& apt-get install -y git-annex-standalone git \
&& rm -rf /tmp/*
FROM tensorflow/tensorflow:2.15.0.post1-gpu-jupyter
COPY [".", "/opt/nobrainer"]
RUN cd /opt/nobrainer
RUN python3 -m pip install --no-cache-dir /opt/nobrainer datalad datalad-osf
RUN git config --global user.email "neuronets@example.com" \
&& git config --global user.name "Neuronets maintainers"
RUN datalad clone https://github.com/neuronets/trained-models /models \
&& cd /models && git-annex enableremote osf-storage \
&& datalad get -s osf-storage .
RUN python3 -m pip install --no-cache-dir /opt/nobrainer
ENV LC_ALL=C.UTF-8 \
LANG=C.UTF-8
WORKDIR "/work"
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4 changes: 2 additions & 2 deletions nobrainer/layers/Conv_v.py
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Expand Up @@ -51,7 +51,7 @@
sample is a `Tensor`."""


"""Variational convolutional layer Abstract nD convolution layer (private,
"""Variational convolutional layer Abstract n-dimensional convolution layer (private,
used as implementation base).
This layer creates a convolution kernel that is convolved
(actually cross-correlated) with the layer input to produce a tensor of
Expand Down Expand Up @@ -361,7 +361,7 @@ def _apply_divergence(


class _ConvReparameterization(_ConvVariational):
"""Abstract nD convolution layer (private, used as implementation base).
"""Abstract n-dimensional convolution layer (private, used as implementation base).
This layer creates a convolution kernel that is convolved
(actually cross-correlated) with the layer input to produce a tensor of
outputs. It may also include a bias addition and activation function
Expand Down
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