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ExternalProject SUNDIALS 3.2.1#1960

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alexsavulescu wants to merge 123 commits intomasterneuronsimulator/nrn:masterfrom sldsneuronsimulator/nrn:sldsCopy head branch name to clipboard

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Commits on Aug 20, 2022

• ExternalProject SUNDIALS 3.2.1

  Show description for 4581ab4
  alexsavulescu

  committed
  4581ab4

• ninja needs BUILD_BYPRODUCTS in ExternalProject_Add

  alexsavulescu

  committed
  0a3692c

Commits on Dec 11, 2022

• Merge branch 'master' into slds

  

  Nicolas Cornu

  authored
  d38f489

• Format

  

  Nicolas Cornu

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  Nicolas Cornu

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  f36e64a

Commits on May 1, 2023

• Merge remote-tracking branch 'origin/master'

  

  Nicolas Cornu

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  Nicolas Cornu

  committed
  daf0008

• Format

  

  Nicolas Cornu

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  Nicolas Cornu

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  857bd86

• Fix name of SUNR functions

  

  Nicolas Cornu

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  Nicolas Cornu

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  152e86f

Commits on May 4, 2023

• Fix segfault (missing IDASetUserData) and N_VSpace_... prototypes.

  nrnhines

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  e613da1

• Build sundials with the same type than nrn

  

  Nicolas Cornu

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  f2c6b4d

• Fully remove sundials

  

  Nicolas Cornu

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• Merge remote-tracking branch 'origin/master'

  

  Nicolas Cornu

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  3341256

• IDASetStopTime should not be called for interpolation.

  nrnhines

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  9a38810

Commits on May 5, 2023

• ctest -R netpar passes. MPI_Comm not available from cvodeobj.cpp

  nrnhines

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• Revert "ctest -R netpar passes. MPI_Comm not available from cvodeobj.cpp"

  Show description for 5a11a3f
  nrnhines

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  5a11a3f

• ctest -R netpar passes. Works with NRNMPI_DYNAMICLOAD.

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  aeb1684

• Problem translating long long foo for NRNMPI_DYNAMICLOAD

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  00b2c66

Commits on May 6, 2023

• update nrntest (cvode version 3 and no hhtable)

  nrnhines

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Commits on May 11, 2023

• Merge branch 'master' into slds

  

  Nicolas Cornu

  authored
  554b326

Commits on May 15, 2023

• Selected messages from old digest-debug branch

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  nrnhines

  committed
  56a1134

• libcrypt for mac

  nrnhines

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  7e6761c

Commits on May 17, 2023

• Merge branch 'master' into slds

  nrnhines

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• No need link libsundials_nvecparallel.a

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  824732b

• Merge branch 'master' into slds

  nrnhines

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  a2044cb

• format

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• Left out }

  nrnhines

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  c60a3eb

• Revert "No need link libsundials_nvecparallel.a"

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  nrnhines

  committed
  fe5c851

Commits on May 25, 2023

• Merge branch 'master' into slds

  nrnhines

  authored
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Commits on May 26, 2023

• "major.minor.patch" = h.CVode().version()

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  65b13f5

• eliminate pytest warning

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  12ddfb5

Commits on May 28, 2023

• CVode 3.2.1 json data for test_nrntest_fast.py

  nrnhines

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  84f05af

Commits on Jun 1, 2023

• Merge branch 'master' into slds

  

  Nicolas Cornu

  authored
  ffdb5fb

• Merge remote-tracking branch 'origin/master'

  

  Nicolas Cornu

  committed
  34062f3

• sundials nvecparallel needs MPI

  

  Nicolas Cornu

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  dbfc76f

• Merge remote-tracking branch 'origin/slds'

  

  Nicolas Cornu

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  06f2bc3

• Fix FindSUNDIALS.cmake

  

  Nicolas Cornu

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  ff9bb0f

• fix linkage

  

  Nicolas Cornu

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  1a84a72

• Try to clean linkage with sundials

  

  Nicolas Cornu

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  910d9ac

• Format

  

  Nicolas Cornu

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  7e9ddf1

• Don't use corenrn if corenrn not set

  

  Nicolas Cornu

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  5ac7685

• Fix fix and fix

  

  Nicolas Cornu

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• Format

  

  Nicolas Cornu

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  53683bf

• trick depends

  

  Nicolas Cornu

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  9d6b033

• try to help sundials to find MPI

  

  Nicolas Cornu

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  7dbf02f

Commits on Jun 2, 2023

• set LIBDIR

  

  Nicolas Cornu

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  Nicolas Cornu

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  6f92bd5

• -tp=haswell is not accepted by sundials

  

  Nicolas Cornu

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  Nicolas Cornu

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  6a4e401

• Merge branch 'master' into slds

  

  Nicolas Cornu

  authored
  0eda725

Commits on Jun 12, 2023

• Merge remote-tracking branch 'origin/master'

  

  Nicolas Cornu

  authored and

  Nicolas Cornu

  committed
  f9749ca

• Remove too more spaces

  

  Nicolas Cornu

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  Nicolas Cornu

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  cfe9ef1

• Merge remote-tracking branch 'origin/master'

  

  Nicolas Cornu

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  Nicolas Cornu

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  6279e08

• CVodeSetFdata => CVodeSetUserData

  

  Nicolas Cornu

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  Nicolas Cornu

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  858b829

Commits on Nov 4, 2023

• Merge branch 'master' into slds

  nrnhines

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  67b677c

Commits on Nov 5, 2023

• eliminate some compiler warnings

  nrnhines

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  3777c05

• update nrntest to master merged hines/update-t12

  nrnhines

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  8f17f69

Commits on Dec 30, 2023

• Merge branch 'master' into slds

  nrnhines

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  93be65e

• on previous master merge, resolve conflict incorrectly

  nrnhines

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  30ee751

Commits on Mar 9, 2024

• Merge branch 'master' into slds

  nrnhines

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  8c46a46

Commits on May 7, 2024

• Merge remote-tracking branch 'origin/master'

  

  Nicolas Cornu

  committed
  9414fb6

Commits on Oct 1, 2024

• Merge branch 'master' into slds

  nrnhines

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  7cf79d6

Commits on Oct 3, 2024

• some files missing in NRN_PARALLEL_SRC_FILES

  nrnhines

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  be164eb

• ninja format

  nrnhines

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  b40997a

• Merge branch 'master' into slds (master for test_nlayer.py conflict)

  nrnhines

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  30c9890

• cvode.version() got lost in a merge

  nrnhines

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  d7c2d10

Commits on Oct 4, 2024

• test_kschan data for cvode 3.2.1

  nrnhines

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  fe1260f

• test_nrntest_fast.py tolerance adjustment for t14

  nrnhines

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  cf0ccb1

• missing json file for ctest -R parallel::nrntest_fast

  nrnhines

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  f26fc9d

• cv3 version of json file for test_netcvode.py

  nrnhines

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  8368752

• Merge branch 'master' into slds

  nrnhines

  authored
  ca98ce5

• temporarily turn off CI tests of rxd

  nrnhines

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Commits on Oct 6, 2024

• temporarily turn off (most) wheel builds and gitlab CI

  nrnhines

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  0d4cc21

• adust a few tolerance values to see if more CI pass

  nrnhines

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  21c7826

Commits on Oct 7, 2024

• Merge branch 'digest-debug-2' into digest-debug-3

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  95b5cca

Commits on Oct 8, 2024

• nrn_digest(i) will print the details of the i'th digest item.

  nrnhines

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  52cd8b8

Commits on Oct 9, 2024

• missing include

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  97b1089

Commits on Oct 15, 2024

• Allow digest when multiple threads.

  nrnhines

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  3277919

• digest print solvex enter y

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  02c9d51

Commits on Oct 17, 2024

• sundial RPowerR uses hoc_pow. nrn_digest(i, "abort") calls abort() on

  Show description for 8b4d2c2
  nrnhines

  committed
  8b4d2c2

Commits on Oct 18, 2024

• Documentation for nrn_digest and use_exp_pow_precision

  nrnhines

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• nrn_digest signature consistent with documentation

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  6910d0a

• occvode.cpp -Wall free

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  932bdff

• Merge branch 'master' into hines/digest-debug-3

  nrnhines

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• Merge branch 'master' into hines/digest-debug-3

  nrnhines

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  50b1163

• The configure option is NRN_ENABLE_ARCH_INDEP_EXP_POW

  nrnhines

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• format

  nrnhines

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  71a629c

• Revert "adust a few tolerance values to see if more CI pass"

  Show description for 4d4889e
  nrnhines

  committed
  4d4889e

• Revert "temporarily turn off (most) wheel builds and gitlab CI"

  Show description for befbb64
  nrnhines

  committed
  befbb64

• Revert "temporarily turn off CI tests of rxd"

  Show description for 083a1c8
  nrnhines

  committed
  083a1c8

• Merge branch 'master' into slds

  nrnhines

  authored
  4c5905b

• Merge branch 'hines/digest-debug-3' into hines/cv3-digest

  nrnhines

  committed
  ce227b4

Commits on Oct 19, 2024

• Use the neuronsimulator fork of sundials

  nrnhines

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  e6017d3

• passes ctest -j 8 (with "-ffp-model=strict")

  nrnhines

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  4267638

Commits on Oct 21, 2024

• Merge branch 'master' into hines/cv3-digest

  nrnhines

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  befec84

Commits on Oct 22, 2024

• Merge branch 'master' into hines/cv3-digest

  nrnhines

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  8099fd1

• Update test/rxd/testdata for cvode3

  nrnhines

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  7c670b7

• document how to update rxd test data

  nrnhines

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  e0a6bc2

Commits on Oct 23, 2024

• Revert "Update test/rxd/testdata for cvode3"

  Show description for 8ab1989
  nrnhines

  committed
  8ab1989

• fix typo

  nrnhines

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  5bdaf5e

• update rxdtest repository (e0a6bc2) 2024-10-22

  nrnhines

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Commits on Oct 24, 2024

• Merge branch 'master' into hines/cv3

  nrnhines

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• cd share/lib/python/neuron/tests; python test_rxd.py --save test_rxd.json

  nrnhines

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  710c2c2

• extend the rxd test data instructions

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Commits on Oct 25, 2024

• propagate compiler from nrn to sundials. SUNDIALS MPI_ENABLE=OFF

  nrnhines

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  9db5f29

• Merge branch 'master' into hines/cv3

  nrnhines

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  5de9b21

• Since sundials MPI_ENABLE=OFF have our own nvector_parallel.h

  nrnhines

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  4464390

Commits on Oct 26, 2024

• nvector_parallel.cpp agnostic with respect to MPI_Comm

  nrnhines

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Commits on Oct 28, 2024

• cast between sunindextype and long

  nrnhines

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  285dada

• update a cv3.json file.

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• nrnparallel_ld follows nvector_parallel style for MPI_Comm

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  ac12c82

• relax resolution requirements so macosx will pass CI without needing

  Show description for 34b82a7
  nrnhines

  committed
  34b82a7

• adjust tol of test_nrntest_fast.py::test_t14[cvode_long_double-3-t]

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  nrnhines

  committed
  4e12ea1

• black format for test/.../*.py

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  b398627

Commits on Oct 31, 2024

• Changes after ctest coverage analysis.

  nrnhines

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  68bc030

• Merge branch 'master' into slds

  nrnhines

  authored
  1c2308c

Commits on Nov 1, 2024

• Replace cvode.extra_scatter_gather with h.beforestep_callback

  nrnhines

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  82c2f25

• rxd tests use rxdtestdata hines/data-fix af269297

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  1204452

• rxd/testdata when test/rxd/3d/test_multi_gridding_mix.py not skipped

  nrnhines

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  11afb3b

• Merge branch 'master' into hines/cv3

  nrnhines

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  c084919

• Replace cvode.extra_scatter_gather with h.beforestep_callback

  nrnhines

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  f96ebe3

• use rxdtestdata hines/cvode3 721ac55a

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  a5f2b48

Commits on Nov 2, 2024

• Don't use cvode version specific filenames or keys for json data.

  nrnhines

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  7286d43

Commits on Nov 6, 2024

• ecs_diffusion needs section to gather data.

  nrnhines

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• Merge branch 'master' into hines/rxd-data-fix

  nrnhines

  authored
  0467293

• Merge branch 'hines/rxd-data-fix' into hines/cv3 and update testdata

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  committed
  d38be72

Commits on Dec 9, 2024

• Merge branch 'master' into hines/cv3

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