Skip to content

Issues: nextflow-io/nextflow

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

398 Open 2,891 Closed
398 Open 2,891 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Feature proposal: Join operator on associative arrays
#5477 opened Nov 6, 2024 by dquintanatorres
Small inconsistency in the workflow output definitions preview
#5476 opened Nov 6, 2024 by nvnieuwk
Fargate complains when memory is exactly the minimum required. bug executor/aws-batch
#5471 opened Nov 5, 2024 by SPPearce
1
3
Pipeline uses cached process despite edited eval script bug
#5470 opened Nov 5, 2024 by CormacKinsella
1
Stubs do not template in script variables
#5469 opened Nov 4, 2024 by jchorl
storeDir does not skip staging of inputs
#5468 opened Nov 4, 2024 by anoronh4
Output DSL not creating parent directory.
#5465 opened Nov 4, 2024 by Joon-Klaps
Setting default maxRetries and errorStrategy and override for some processes bug
#5464 opened Nov 4, 2024 by mcolpus
1
@jorgee
3
output block is needed for publishing outputs from workflow bug
#5460 opened Nov 1, 2024 by fgroll
1
"IllegalArgumentException: Not a valid trace fields value" with Valid Trace Fields
#5457 opened Nov 1, 2024 by exai-sukh
-stub flag triggers error "Cannot invoke method clone() on null object"
#5456 opened Oct 31, 2024 by xuyangyuio
1
@jorgee
2
Nextflow inspect nf-core/rnaseq fails with error
#5455 opened Oct 31, 2024 by mahesh-panchal
1
Nextflow takes a long time to report a process as finished after the SLURM job has finished
#5454 opened Oct 30, 2024 by mpage21
micromamba-exported explicit conda lock files don't work over http, or named as .lock
#5453 opened Oct 30, 2024 by pinin4fjords
Nextflow with Azure batch appears to fail when reading from multiple containers
#5448 opened Oct 30, 2024 by zjupNN
2
Adding -stub breaks cache of non-stub processes
#5446 opened Oct 29, 2024 by schorlton-bugseq
Azure + Fusion: Accessing data from multiple containers results in 403
#5444 opened Oct 29, 2024 by alberto-miranda
5
Error when using -with-weblog option in combination with the output-block
#5443 opened Oct 29, 2024 by di-hardt
1
Resume namespace errors
#5439 opened Oct 28, 2024 by LouisLeNezet
Improve error message reported on failed run
#5437 opened Oct 28, 2024 by pditommaso
Please add parameter to select IP address provisioning type when autoPoolMode and vnet is set in config file
#5429 opened Oct 24, 2024 by zjupNN
Clean work dir without sudo software/docker
#5427 opened Oct 23, 2024 by akotlar
feature request: Make "/bin/bash" configurable
#5420 opened Oct 22, 2024 by stianlagstad
1
Task ext directive not always included in task hash computation lang/processes
#5417 opened Oct 21, 2024 by trev-f
3
Conditionally populate resourceLabels to tag field in nf-amazon plugin's AwsBatchTaskHandler for AWS Batch Template Registration executor/aws-batch
#5413 opened Oct 17, 2024 by rbartelme-pivot
3
ProTip! Exclude everything labeled bug with -label:bug.