Use custom values to define sequence format #3207

Job	Run time
pyright	17s
pathogen-repo-ci (dengue)	2m 51s
check-docs	39s
pathogen-repo-ci (lassa)	7m 56s
mypy	54s
pathogen-repo-ci (measles)	1m 20s
pathogen-repo-ci-v0 (avian-flu)	50s
pathogen-repo-ci (mpox)	1m 12s
pathogen-repo-ci-v0 (ebola)	55s
pathogen-repo-ci-v0 (mumps)	55s
pathogen-repo-ci (oropouche)	18m 29s
test (python=3.9 biopython=1.80)	13m 11s
pathogen-repo-ci (rabies)	18m 23s
pathogen-repo-ci-v0 (ncov)	1m 9s
test (python=3.9 biopython=1.82)	12m 58s
pathogen-repo-ci (seasonal-cov)	1m 26s
pathogen-repo-ci-v0 (rsv)	8m 28s
test (python=3.9 biopython=latest)	13m 15s
pathogen-repo-ci (wnv)	1m 9s
pathogen-repo-ci-v0 (seasonal-flu)	1m 8s
test (python=3.10 biopython=1.80)	13m 21s
pathogen-repo-ci (yellow-fever)	4m 29s
pathogen-repo-ci-v0 (tb)	1m 14s
test (python=3.10 biopython=1.82)	13m 51s
pathogen-repo-ci (zika)	1m 2s
test (python=3.10 biopython=latest)	15m 6s
test (python=3.11 biopython=1.80)	13m 29s
test (python=3.11 biopython=1.82)	14m 6s
test (python=3.11 biopython=latest)	13m 29s
test (python=3.12 biopython=1.82)	20m 58s
test (python=3.12 biopython=latest)	20m 24s
build-docs / build	2m 25s
codecov	11s
release	0s
rebuild-docker-image	0s
	4h 1m 30s

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