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ambient-setup: Add csvtk, seqkit, and tsv-utils
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Prompted by nextstrain/measles#10 (comment)

These have become common commands used across Nextstrain pathogen repos¹
since they were added to the Docker runtime²

¹ https://github.com/search?q=org%3Anextstrain+AND+%28%22csvtk%22+OR+%22tsv-select%22+OR+%22seqkit%22%29&type=code
² nextstrain/docker-base@992c575
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joverlee521 committed Jan 25, 2024
1 parent 090b356 commit b290fae
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2 changes: 1 addition & 1 deletion src/snippets/ambient-setup.rst
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Expand Up @@ -12,7 +12,7 @@
-c conda-forge -c bioconda --yes \
augur auspice nextclade \
snakemake git epiweeks pangolin pangolearn \
ncbi-datasets-cli
ncbi-datasets-cli csvtk seqkit tsv-utils
3. Set the runtime:

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