Country include description out of sync? #76
Comments
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I think the text is wrong, as the config shows: So in reality, to be included, a location needs 100 sequences within 30 days of today. Would be good to relax this I think. Recent data is not the most important criterion. Some countries just don't have recent data, that doesn't mean they shouldn't be included if they have slightly more delayed data. So I think In addition, the website/html should pull the description from the config file and not hard code so that doc and code are automatically synced. |
It would be better to sync these values with the config file so that they don't need to be changed in two places and get out of sync but it seems complicated to do this with the current setup At least this partially fixes Country include description out of sync? #76
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These are the force excluded countries: Not sure why we'd force exclude Czechia with 10m people but not force exclude Iceland with ~100-200k. |
Current Behavior
The website currently states for clade frequencies:
We show the following countries:
This doesn't seem to be correct, or at least missing important context, as when I look for countries with more than 100 sequences with collection date <150 days ago on covSpectrum (https://cov-spectrum.org/explore/World/AllSamples/from%3D2023-07-02%26to%3D2023-11-22/variants/international-comparison?&) I get the following countries:
Expected behavior
Brazil | 2781 | 2023-26 | 2023-45
New Zealand | 2668 | 2023-26 | 2023-43
Israel | 2617 | 2023-26 | 2023-45
Greece | 2469 | 2023-27 | 2023-40
Russia | 1963 | 2023-26 | 2023-44
Austria | 1411 | 2023-27 | 2023-46
Peru | 1254 | 2023-26 | 2023-43
Luxembourg | 1213 | 2023-27 | 2023-43
Portugal | 1198 | 2023-27 | 2023-45
Mexico | 1074 | 2023-26 | 2023-42
Croatia | 858 | 2023-27 | 2023-43
Chile | 787 | 2023-27 | 2023-43
Thailand | 773 | 2023-26 | 2023-43
Slovenia | 752 | 2023-26 | 2023-42
Colombia | 653 | 2023-26 | 2023-43
Ukraine | 652 | 2023-27 | 2023-44
Taiwan | 581 | 2023-26 | 2023-45
South Africa | 493 | 2023-27 | 2023-41
Turkey | 465 | 2023-28 | 2023-40
Poland | 459 | 2023-28 | 2023-45
Norway | 441 | 2023-26 | 2023-44
Romania | 364 | 2023-27 | 2023-40
Argentina | 359 | 2023-26 | 2023-38
Malaysia | 359 | 2023-26 | 2023-43
Costa Rica | 341 | 2023-26 | 2023-43
Guatemala | 321 | 2023-27 | 2023-40
India | 285 | 2023-26 | 2023-44
Georgia | 272 | 2023-27 | 2023-40
Mauritius | 270 | 2023-27 | 2023-44
Bulgaria | 254 | 2023-27 | 2023-43
Dominican Republic | 200 | 2023-27 | 2023-35
Notably, we include Iceland with only 700 sequences but exclude Brazil with 2500
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