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  • University of Ljubljana
  • Ljubljana, Slovenia

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nezapajek/README.md

Hi there! I'm Neža, a molecular biologist & bioinformatician from Ljubljana, Slovenia

Connect with me:

https://www.linkedin.com/in/neza-pajek-arambasic/

Languages and Tools:

python bash R LaTeX snakemake

IDE:

VSCode JupyterNotebook

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  1. project-tobamo project-tobamo Public

    Preparation of a curated catalogue of sequences of possible new tobamoviruses by scanning a large accumulated set of data from different metagenomics data repositories.

    Jupyter Notebook 3

  2. proteomics-ms-parsers proteomics-ms-parsers Public

    Parsing output data from MaxQuant, MetaMorpheus, AlphaPept and Fragpipe (MSFragger)

    Jupyter Notebook

  3. bioinformatics-specialization bioinformatics-specialization Public

    Honors track code challenges for Bioinformatics Specialization (UC San Diego) course on Coursera.

    Jupyter Notebook

  4. proteus-skin-microbiome proteus-skin-microbiome Public

    Amplicon sequencing data analysis of skin microbiota in the black olm subspecies using Qiime2

    Jupyter Notebook