Merge pull request #360 from ggabernet/dev

Update pipeline diagrams
nf-core · Dec 10, 2024 · 6637452 · 6637452
2 parents 548709c + 4fcc4af
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diff --git a/docs/images/airrflow_workflow_overview.ai b/docs/images/airrflow_workflow_overview.ai
diff --git a/docs/images/airrflow_workflow_overview.pdf b/docs/images/airrflow_workflow_overview.pdf
diff --git a/docs/images/airrflow_workflow_overview.png b/docs/images/airrflow_workflow_overview.png
diff --git a/docs/images/metro-map-airrflow.ai b/docs/images/metro-map-airrflow.ai
diff --git a/docs/images/metro-map-airrflow.pdf b/docs/images/metro-map-airrflow.pdf
diff --git a/docs/images/metro-map-airrflow.png b/docs/images/metro-map-airrflow.png
diff --git a/docs/usage.md b/docs/usage.md
@@ -250,7 +250,7 @@ And similarly for TCR libraries:
 
 ```bash
 nextflow run nf-core/airrflow -r <release> \
--profile nebnext_umi_bcr,docker \
+-profile nebnext_umi_tcr,docker \
 --input input_samplesheet.tsv \
 --cprimers https://bitbucket.org/kleinstein/immcantation/raw/354f49228a43b4c2858d67fb09886126b314e317/protocols/AbSeq/AbSeq_R1_Mouse_TR_Primers.fasta \
 --internal_cregion_sequences https://bitbucket.org/kleinstein/immcantation/raw/354f49228a43b4c2858d67fb09886126b314e317/protocols/AbSeq/AbSeq_Mouse_TR_InternalCRegion.fasta \