Fix PIPELINE_INITIALISATION tests

nf-core · Feb 20, 2024 · 61a5b18 · 61a5b18
1 parent 3a92ac0
commit 61a5b18
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 4 deletions.
diff --git a/main.nf b/main.nf
@@ -90,4 +90,4 @@ workflow {
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
     THE END
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-*/
+*/
diff --git a/.../local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test b/.../local/utils_nfcore_fetchngs_pipeline/tests/main.workflow_pipeline_initialisation.nf.test
@@ -17,16 +17,18 @@ nextflow_workflow {
                 help                = false
                 validate_params     = false
                 monochrome_logs     = false
+                nextflow_cli_args   = ''
                 outdir              = "$params.outdir"
                 ena_metadata_fields = null
 
                 input[0] = version
                 input[1] = help
                 input[2] = validate_params
                 input[3] = monochrome_logs
-                input[4] = outdir
-                input[5] = 'https://raw.githubusercontent.com/nf-core/test-datasets/2732b911c57e607fa7aea5ba0c3d91b25bafb662/testdata/v1.12.0/sra_ids_test.csv'
-                input[6] = ena_metadata_fields
+                input[4] = nextflow_cli_args
+                input[5] = outdir
+                input[6] = 'https://raw.githubusercontent.com/nf-core/test-datasets/2732b911c57e607fa7aea5ba0c3d91b25bafb662/testdata/v1.12.0/sra_ids_test.csv'
+                input[7] = ena_metadata_fields
                 """
             }
         }