Merge pull request #218 from maxulysse/update_workflows_tests

Update workflows tests
nf-core · Oct 16, 2023 · 62b3b5f · 62b3b5f
2 parents 879d550 + c75c1d0
commit 62b3b5f
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Showing 16 changed files with 64 additions and 64 deletions.
diff --git a/workflows/sra/tests/main.nf.test b/workflows/sra/tests/main.nf.test
@@ -18,7 +18,7 @@ nextflow_workflow {
         when {
             workflow {
                 """
-                input[0] = Channel.from('DRR026872', 'DRR028935', 'ERR1160846', 'GSE214215', 'GSM4907283', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
+                input[0] = Channel.from('ERR1160846', 'GSE214215', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
                 """
             }
             params {

diff --git a/workflows/sra/tests/main.nf.test.snap b/workflows/sra/tests/main.nf.test.snap
@@ -6,14 +6,14 @@
 
                 ],
                 "1": [
-                    "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192"
+                    "samplesheet.csv:md5,5926f40ded37e0e6ce0b290c445772ac"
                 ],
                 "2": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "3": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
@@ -29,16 +29,16 @@
 
                 ],
                 "mappings": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "sample_mappings": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
                 "samplesheet": [
-                    "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192"
+                    "samplesheet.csv:md5,5926f40ded37e0e6ce0b290c445772ac"
                 ],
                 "versions": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
@@ -50,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-10-09T11:10:06.701286"
+        "timestamp": "2023-10-13T13:45:55.621951"
     }
 }
diff --git a/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test b/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test
@@ -18,7 +18,7 @@ nextflow_workflow {
         when {
             workflow {
                 """
-                input[0] = Channel.from('DRR026872', 'DRR028935', 'ERR1160846', 'GSE214215', 'GSM4907283', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
+                input[0] = Channel.from('ERR1160846', 'GSE214215', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
                 """
             }
             params {

diff --git a/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test.snap b/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test.snap
@@ -6,14 +6,14 @@
 
                 ],
                 "1": [
-                    "samplesheet.csv:md5,d161b1a26b415a61064d8c558c9695c5"
+                    "samplesheet.csv:md5,4ea86d2a38bf25d025331afd1925a138"
                 ],
                 "2": [
-                    "id_mappings.csv:md5,e8a7d8effe4af1d999dc26cf92cf6621"
+                    "id_mappings.csv:md5,e581a9117ed2cc8e98e65c25fe7f34aa"
                 ],
                 "3": [
                     [
-                        "multiqc_config.yml:md5,b1c25951b237552448e878f7c9dc4235",
+                        "multiqc_config.yml:md5,0f18d574c7ddfa08cf444a593cb91cde",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
@@ -29,16 +29,16 @@
 
                 ],
                 "mappings": [
-                    "id_mappings.csv:md5,e8a7d8effe4af1d999dc26cf92cf6621"
+                    "id_mappings.csv:md5,e581a9117ed2cc8e98e65c25fe7f34aa"
                 ],
                 "sample_mappings": [
                     [
-                        "multiqc_config.yml:md5,b1c25951b237552448e878f7c9dc4235",
+                        "multiqc_config.yml:md5,0f18d574c7ddfa08cf444a593cb91cde",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
                 "samplesheet": [
-                    "samplesheet.csv:md5,d161b1a26b415a61064d8c558c9695c5"
+                    "samplesheet.csv:md5,4ea86d2a38bf25d025331afd1925a138"
                 ],
                 "versions": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
@@ -50,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-10-06T12:10:32.762201"
+        "timestamp": "2023-10-13T13:41:56.570144"
     }
 }
diff --git a/workflows/sra/tests/sra_force_sratools_download.nf.test b/workflows/sra/tests/sra_force_sratools_download.nf.test
@@ -18,7 +18,7 @@ nextflow_workflow {
         when {
             workflow {
                 """
-                input[0] = Channel.from('DRR026872', 'DRR028935', 'ERR1160846', 'GSE214215', 'GSM4907283', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
+                input[0] = Channel.from('ERR1160846', 'GSE214215', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
                 """
             }
             params {

diff --git a/workflows/sra/tests/sra_force_sratools_download.nf.test.snap b/workflows/sra/tests/sra_force_sratools_download.nf.test.snap
@@ -6,14 +6,14 @@
 
                 ],
                 "1": [
-                    "samplesheet.csv:md5,f582a7cf6b4a507e3ccbd2ebd134bd26"
+                    "samplesheet.csv:md5,461dfaa7b95f84210840347ef8cc93c2"
                 ],
                 "2": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "3": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
@@ -28,16 +28,16 @@
 
                 ],
                 "mappings": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "sample_mappings": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
                 "samplesheet": [
-                    "samplesheet.csv:md5,f582a7cf6b4a507e3ccbd2ebd134bd26"
+                    "samplesheet.csv:md5,461dfaa7b95f84210840347ef8cc93c2"
                 ],
                 "versions": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
@@ -48,6 +48,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-10-09T12:31:35.173406"
+        "timestamp": "2023-10-13T13:51:26.617172"
     }
 }
diff --git a/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test b/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test
@@ -18,7 +18,7 @@ nextflow_workflow {
         when {
             workflow {
                 """
-                input[0] = Channel.from('DRR026872', 'DRR028935', 'ERR1160846', 'GSE214215', 'GSM4907283', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
+                input[0] = Channel.from('ERR1160846', 'GSE214215', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
                 """
             }
             params {

diff --git a/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test.snap
@@ -6,14 +6,14 @@
 
                 ],
                 "1": [
-                    "samplesheet.csv:md5,46752dd6abac80b59573910f7ce4babe"
+                    "samplesheet.csv:md5,0deebc93328dcbb63762aa91d4fc9f35"
                 ],
                 "2": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "3": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
@@ -29,16 +29,16 @@
 
                 ],
                 "mappings": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "sample_mappings": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
                 "samplesheet": [
-                    "samplesheet.csv:md5,46752dd6abac80b59573910f7ce4babe"
+                    "samplesheet.csv:md5,0deebc93328dcbb63762aa91d4fc9f35"
                 ],
                 "versions": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
@@ -50,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-10-09T11:48:46.177797"
+        "timestamp": "2023-10-13T13:37:42.486986"
     }
 }
diff --git a/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test b/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test
@@ -18,7 +18,7 @@ nextflow_workflow {
         when {
             workflow {
                 """
-                input[0] = Channel.from('DRR026872', 'DRR028935', 'ERR1160846', 'GSE214215', 'GSM4907283', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
+                input[0] = Channel.from('ERR1160846', 'GSE214215', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
                 """
             }
             params {

diff --git a/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test.snap
@@ -6,14 +6,14 @@
 
                 ],
                 "1": [
-                    "samplesheet.csv:md5,69117245b73776d6e4daecdbfdff9767"
+                    "samplesheet.csv:md5,e20d0858b2ff04a62d50274a2527b913"
                 ],
                 "2": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "3": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
@@ -29,16 +29,16 @@
 
                 ],
                 "mappings": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "sample_mappings": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
                 "samplesheet": [
-                    "samplesheet.csv:md5,69117245b73776d6e4daecdbfdff9767"
+                    "samplesheet.csv:md5,e20d0858b2ff04a62d50274a2527b913"
                 ],
                 "versions": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
@@ -50,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-10-06T12:14:02.500312"
+        "timestamp": "2023-10-13T13:43:56.980991"
     }
 }
diff --git a/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test b/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test
@@ -18,7 +18,7 @@ nextflow_workflow {
         when {
             workflow {
                 """
-                input[0] = Channel.from('DRR026872', 'DRR028935', 'ERR1160846', 'GSE214215', 'GSM4907283', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
+                input[0] = Channel.from('ERR1160846', 'GSE214215', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
                 """
             }
             params {

diff --git a/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test.snap
@@ -6,14 +6,14 @@
 
                 ],
                 "1": [
-                    "samplesheet.csv:md5,0705e78609390cc464c2fb10051178bc"
+                    "samplesheet.csv:md5,c781b226b9aac812c1d38881145a74d6"
                 ],
                 "2": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "3": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
@@ -29,16 +29,16 @@
 
                 ],
                 "mappings": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "sample_mappings": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
                 "samplesheet": [
-                    "samplesheet.csv:md5,0705e78609390cc464c2fb10051178bc"
+                    "samplesheet.csv:md5,c781b226b9aac812c1d38881145a74d6"
                 ],
                 "versions": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
@@ -50,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-10-06T12:07:01.184728"
+        "timestamp": "2023-10-13T13:39:55.31037"
     }
 }
diff --git a/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test b/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test
@@ -18,7 +18,7 @@ nextflow_workflow {
         when {
             workflow {
                 """
-                input[0] = Channel.from('DRR026872', 'DRR028935', 'ERR1160846', 'GSE214215', 'GSM4907283', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
+                input[0] = Channel.from('ERR1160846', 'GSE214215', 'SRR12848126', 'SRR13191702', 'SRR14593545', 'SRR14709033', 'SRR9984183')
                 """
             }
             params {

diff --git a/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test.snap
@@ -6,14 +6,14 @@
 
                 ],
                 "1": [
-                    "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192"
+                    "samplesheet.csv:md5,5926f40ded37e0e6ce0b290c445772ac"
                 ],
                 "2": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "3": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
@@ -29,16 +29,16 @@
 
                 ],
                 "mappings": [
-                    "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
+                    "id_mappings.csv:md5,57116724ccf0215795b44d4458e6861f"
                 ],
                 "sample_mappings": [
                     [
-                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "multiqc_config.yml:md5,77050a65c8ad23e5b052b576bff1eeff",
                         "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
                     ]
                 ],
                 "samplesheet": [
-                    "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192"
+                    "samplesheet.csv:md5,5926f40ded37e0e6ce0b290c445772ac"
                 ],
                 "versions": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
@@ -50,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-10-09T11:44:49.759545"
+        "timestamp": "2023-10-13T13:35:41.371352"
     }
 }