Some linting cleanup (mostly fixing local modules to be more nf-core compliant) #1751
Triggered via pull request
October 14, 2024 16:14
jfy133
Status
Cancelled
Total duration
2m 21s
Artifacts
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ci.yml
on: pull_request
Run single test to checkm due to database download
1m 53s
Matrix: Run workflow profile
Matrix: Run pipeline with test data
Annotations
23 errors and 2 warnings
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Run workflow profile (test_adapterremoval)
Process completed with exit code 1.
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Run workflow profile (test_single_end)
The job was canceled because "test_adapterremoval" failed.
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Run workflow profile (test_single_end)
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Run workflow profile (test_busco_auto)
The job was canceled because "test_adapterremoval" failed.
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Run workflow profile (test_busco_auto)
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Run workflow profile (test_concoct)
The job was canceled because "test_adapterremoval" failed.
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Run workflow profile (test_concoct)
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Run workflow profile (test_hybrid_host_rm)
The job was canceled because "test_adapterremoval" failed.
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Run workflow profile (test_hybrid_host_rm)
Process completed with exit code 1.
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Run workflow profile (test_virus_identification)
The job was canceled because "test_adapterremoval" failed.
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Run workflow profile (test_virus_identification)
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Run workflow profile (test_binrefinement)
The job was canceled because "test_adapterremoval" failed.
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Run workflow profile (test_binrefinement)
Process completed with exit code 1.
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Run workflow profile (test_ancient_dna)
The job was canceled because "test_adapterremoval" failed.
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Run workflow profile (test_ancient_dna)
The operation was canceled.
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Run workflow profile (test_host_rm)
The job was canceled because "test_adapterremoval" failed.
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Run workflow profile (test_host_rm)
The operation was canceled.
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Run workflow profile (test_hybrid)
The job was canceled because "test_adapterremoval" failed.
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Run workflow profile (test_hybrid)
The operation was canceled.
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Run single test to checkm due to database download
Canceling since a higher priority waiting request for 'nf-core CI-693' exists
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Run single test to checkm due to database download
The operation was canceled.
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Run pipeline with test data (23.04.0)
Canceling since a higher priority waiting request for 'nf-core CI-693' exists
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Run pipeline with test data (latest-everything)
Canceling since a higher priority waiting request for 'nf-core CI-693' exists
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Run workflow profile (test_adapterremoval)
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
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Run workflow profile (test_adapterremoval)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
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