replaced old MultiQC containers with nf-core/ubuntu:20.04

nf-core · Aug 16, 2024 · 5851a1d · 5851a1d
1 parent 171ea0d
commit 5851a1d
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Showing 3 changed files with 9 additions and 12 deletions.
diff --git a/modules/local/adjust_maxbin2_ext.nf b/modules/local/adjust_maxbin2_ext.nf
@@ -2,11 +2,10 @@ process ADJUST_MAXBIN2_EXT {
     tag "${meta.assembler}-${meta.id}"
     label 'process_low'
 
-    // Using container from multiqc since it'll be included anyway
-    conda "bioconda::multiqc=1.12"
+    conda "conda-forge::sed=4.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/multiqc:1.12--pyhdfd78af_0' :
-        'biocontainers/multiqc:1.12--pyhdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
+        'nf-core/ubuntu:20.04' }"
 
     input:
     tuple val(meta), path(bins)

diff --git a/modules/local/rename_postdastool.nf b/modules/local/rename_postdastool.nf
@@ -2,11 +2,10 @@ process RENAME_POSTDASTOOL {
     tag "${meta.assembler}-${meta.id}"
     label 'process_low'
 
-    // Using container from multiqc since it'll be included anyway
-    conda "bioconda::multiqc=1.12"
+    conda "conda-forge::sed=4.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/multiqc:1.12--pyhdfd78af_0' :
-        'biocontainers/multiqc:1.12--pyhdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
+        'nf-core/ubuntu:20.04' }"
 
     input:
     tuple val(meta), path(bins)

diff --git a/modules/local/rename_predastool.nf b/modules/local/rename_predastool.nf
@@ -2,11 +2,10 @@ process RENAME_PREDASTOOL {
     tag "${meta.assembler}-${meta.binner}-${meta.id}"
     label 'process_low'
 
-    // Using container from multiqc since it'll be included anyway
-    conda "bioconda::multiqc=1.12"
+    conda "conda-forge::sed=4.7"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/multiqc:1.12--pyhdfd78af_0' :
-        'biocontainers/multiqc:1.12--pyhdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/ubuntu:20.04' :
+        'nf-core/ubuntu:20.04' }"
 
     input:
     tuple val(meta), path(bins)