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Important! Template update for nf-core/tools v2.13.1 #599

Merged
merged 25 commits into from
May 6, 2024
Merged

Important! Template update for nf-core/tools v2.13.1 #599

merged 25 commits into from
May 6, 2024

Commits on Feb 20, 2024

  1. Template update for nf-core/tools version 2.13

    @nf-core-bot
    nf-core-bot committed Feb 20, 2024
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Commits on Feb 29, 2024

  1. Template update for nf-core/tools version 2.13.1

    @nf-core-bot
    nf-core-bot committed Feb 29, 2024
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Commits on Mar 26, 2024

  1. Merge branch 'dev' into nf-core-template-merge-2.13.1 [EXPECT TO FAIL]

    @jfy133
    jfy133 committed Mar 26, 2024
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  2. Get basic input samplesheet validation in, however need to check from… 

    …Samplesheet/map function in utils_nfcore_mag_pipeline
    @jfy133
    jfy133 committed Mar 26, 2024
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  3. Get pipeline seemingly running again

    @jfy133
    jfy133 committed Mar 26, 2024
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Commits on Mar 27, 2024

  1. Re-add single end as can't mix the two in one run

    @jfy133
    jfy133 committed Mar 27, 2024
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  2. Get SR tests working, start adding assmebly

    @jfy133
    jfy133 committed Mar 27, 2024
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  3. Re-add missing single end test

    @jfy133
    jfy133 committed Mar 27, 2024
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  4. Re-add single-end test config

    @jfy133
    jfy133 committed Mar 27, 2024
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Commits on Apr 19, 2024

  1. All --input validation checks working

    @jfy133
    jfy133 committed Apr 19, 2024
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  2. Move all input parameter code to utils_nfcore_mag subworkflow

    @jfy133
    jfy133 committed Apr 19, 2024
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  3. Complete validation transfer

    @jfy133
    jfy133 committed Apr 19, 2024
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  4. Merge branch 'dev' of github.com:nf-core/mag into nf-core-template-me… 

    …rge-2.13.1
    @jfy133
    jfy133 committed Apr 19, 2024
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  5. update CHANGELOG

    @jfy133
    jfy133 committed Apr 19, 2024
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  6. Update nextflow_schema.json

    @jfy133
    jfy133 authored Apr 19, 2024
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  7. Apply suggestions from code review

    @jfy133
    jfy133 authored Apr 19, 2024
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  8. Update nextflow_schema.json

    @jfy133
    jfy133 authored Apr 19, 2024
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  9. Remove duplication

    @jfy133
    jfy133 committed Apr 19, 2024
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  10. Merge branch 'nf-core-template-merge-2.13.1' of github.com:nf-core/ma… 

    …g into nf-core-template-merge-2.13.1
    @jfy133
    jfy133 committed Apr 19, 2024
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Commits on Apr 24, 2024

  1. Fix validateInputSamplesheet usage

    @jfy133
    jfy133 committed Apr 24, 2024
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Commits on May 6, 2024

  1. Fix zenodo ID

    @jfy133
    jfy133 committed May 6, 2024
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  2. Apply suggestions from code review 

    Co-authored-by: Maxime U Garcia <max.u.garcia@gmail.com>
    @jfy133 @maxulysse
    jfy133 and maxulysse authored May 6, 2024
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  3. Fix linting error

    @jfy133
    jfy133 committed May 6, 2024
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  4. Merge branch 'nf-core-template-merge-2.13.1' of github.com:nf-core/ma… 

    …g into nf-core-template-merge-2.13.1
    @jfy133
    jfy133 committed May 6, 2024
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  5. Fix gunzipping of pre-supplied assmeblies

    @jfy133
    jfy133 committed May 6, 2024
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