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Patch release 3.0.2 for fixing BUSCO, CONCOCT and Docker container errors #635

Merged
merged 23 commits into from
Jul 4, 2024
Merged

Patch release 3.0.2 for fixing BUSCO, CONCOCT and Docker container errors #635

merged 23 commits into from
Jul 4, 2024

Commits on Jun 10, 2024

  1. Post release version bump

    @jfy133
    jfy133 committed Jun 10, 2024
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  2. Merge pull request #629 from nf-core/dump-version-post 

    Post release version bump
    @jfy133
    jfy133 authored Jun 10, 2024
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Commits on Jun 20, 2024

  1. Get BUSCO to use --offline mode if a database is supplied

    @jfy133
    jfy133 committed Jun 20, 2024
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  2. Formatting

    @jfy133
    jfy133 committed Jun 20, 2024
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Commits on Jun 27, 2024

  1. Update CONCOCT workflow to remove mismatch

    @jfy133
    jfy133 committed Jun 27, 2024
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  2. Add cGHANGELGO

    @jfy133
    jfy133 committed Jun 27, 2024
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  3. Replace PORECHOP with official module

    @jfy133
    jfy133 committed Jun 27, 2024
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  4. Update CHANGELOG.md

    @jfy133
    jfy133 authored Jun 27, 2024
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  5. Bump nanoplot version 1.41.6 for valid docker container

    @jfy133
    jfy133 committed Jun 27, 2024
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  6. Remove some old local modules

    @jfy133
    jfy133 committed Jun 27, 2024
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  7. update NanoLyse module

    @jfy133
    jfy133 committed Jun 27, 2024
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  8. Output docs update

    @jfy133
    jfy133 committed Jun 27, 2024
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  9. Merge pull request #632 from nf-core/general-container-updates-docker… 

    …-manifest

Fix: container updates docker manifest issues
    @jfy133
    jfy133 authored Jun 27, 2024
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Commits on Jun 28, 2024

  1. Merge branch 'dev' into concoct-updates

    @jfy133
    jfy133 committed Jun 28, 2024
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  2. Merge branch 'dev' into busco-offline

    @jfy133
    jfy133 committed Jun 28, 2024
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  3. Merge pull request #633 from nf-core/busco-offline 

    Change BUSCO to run in offline mode when database already downloaded
    @jfy133
    jfy133 authored Jun 28, 2024
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  4. Merge pull request #631 from nf-core/concoct-updates 

    Update CONCOCT workflow to remove mismatch failure and update container to fix slow single-threaded CONCOCT
    @jfy133
    jfy133 authored Jun 28, 2024
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  5. Bump versions for patch release

    @jfy133
    jfy133 committed Jun 28, 2024
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  6. Merge pull request #634 from nf-core/patch-release-bump 

    Bump versions for patch release
    @jfy133
    jfy133 authored Jun 28, 2024
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Commits on Jul 1, 2024

  1. Update CHANGELOG.md

    @jfy133
    jfy133 authored Jul 1, 2024
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Commits on Jul 4, 2024

  1. Update CHANGELOG.md 

    Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
    @jfy133 @mashehu
    jfy133 and mashehu authored Jul 4, 2024
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  2. Update CHANGELOG.md

    @jfy133
    jfy133 authored Jul 4, 2024
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  3. Add missing versions channel in subworkflow

    @jfy133
    jfy133 committed Jul 4, 2024
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