-
Notifications
You must be signed in to change notification settings - Fork 13
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Mesmer in MacOS #31
Comments
Just to add a bit more context.
Full traceback of MESMER with singularity
|
Regarding the inability to run I think the mesmer/singularity problem is caused by the line |
ran Traceback
Seems there is an issue with container and the exec command, I am adding the Work files as a zip here: |
Regarding the MESMER containerOptions, thank you for explaining, that makes sense. |
Thanks for pinging me @josenimo ! The reason we had to put I would try |
Yes, the mesmer module has already been updated in #29 to solve this. |
Description of the bug
Running nfcore/mcmicro test locally on a macOS (m2) runs into an issue with Mesmer.
Probably due to Docker container incompatibility with amd64 processing.
Command used and terminal output
Relevant files
nextflow.log
System information
Nextflow version 23.10.1
Hardware: MacBook Pro Apple M2 Pro 16Gb Memory
Executor: Local
Container Engine: Docker
OS: Sonoma 14.0 (23A344)
nfcore/mcmicro version: https://github.com/jmuhlich/mcmicro/tree/sample_sheet_mod
The text was updated successfully, but these errors were encountered: