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Should registration output be published when tma_dearray is enabled?
enhancement
Improvement for existing functionality
#53
opened Aug 12, 2024 by
jmuhlich
Add stardist into nf-core/mcmicro
enhancement
Improvement for existing functionality
#51
opened Aug 9, 2024 by
migueLib
Expanding MCQuant nf-core module
enhancement
Improvement for existing functionality
#46
opened Jul 8, 2024 by
LukasHats
Add staging module for PhenoImager data
enhancement
Improvement for existing functionality
#45
opened Jul 5, 2024 by
chiarasch
Add a staging module for macsima data.
enhancement
Improvement for existing functionality
#40
opened Jun 26, 2024 by
VictorDidier
Consider --illumination manual vs. checking for the presence of the dfp/ffp samplesheet columns
enhancement
Improvement for existing functionality
#38
opened May 20, 2024 by
jmuhlich
Borrow ideas for how to design "restart" feature from sarek
enhancement
Improvement for existing functionality
#37
opened May 17, 2024 by
jmuhlich
Module parameters
enhancement
Improvement for existing functionality
#36
opened May 13, 2024 by
josenimo
nf-validation isn't checking the files/directories in the samplesheets
bug
Something isn't working
#34
opened May 9, 2024 by
RobJY
Design a mechanism to pass image pixel size to Mesmer and other tools
bug
Something isn't working
#30
opened Apr 24, 2024 by
jmuhlich
input_sample code path does not explicitly sort input image filenames
bug
Something isn't working
#28
opened Apr 23, 2024 by
jmuhlich
basicpy output should be split up by sample ID
bug
Something isn't working
#27
opened Apr 11, 2024 by
jmuhlich
move custom validation to groovy
enhancement
Improvement for existing functionality
#25
opened Mar 19, 2024 by
RobJY
add darkfield correction flag to default basicpy args
enhancement
Improvement for existing functionality
#21
opened Mar 18, 2024 by
jmuhlich
Should markers.csv have a per-cycle channel number?
enhancement
Improvement for existing functionality
#17
opened Mar 15, 2024 by
jmuhlich
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