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Expanding MCQuant nf-core module #46

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LukasHats opened this issue Jul 8, 2024 · 0 comments
Open
2 of 4 tasks

Expanding MCQuant nf-core module #46

LukasHats opened this issue Jul 8, 2024 · 0 comments
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enhancement Improvement for existing functionality

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@LukasHats
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LukasHats commented Jul 8, 2024

Description of feature

Currently MCQuant has the option to pass additional skimage regionprops using the CLI, which is very nice. We would like to extend that by including specific glcm features in the MCQuant script.
Further, we would like McQuant to accept all available bioformats (e.g. also qptiff)
Other adjustments might have to be implemented if SpatialData is included (again depending on where - from start, after ASHLAR or after quant?)

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@LukasHats LukasHats added the enhancement Improvement for existing functionality label Jul 8, 2024
@LukasHats LukasHats self-assigned this Jul 8, 2024
@LukasHats LukasHats changed the title Expanding McQuant nf-core module Expanding MCQuant nf-core module Jul 8, 2024
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