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use dorny/paths-filter with git commands instead of GitHub API #1592

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use dorny/paths-filter with git commands instead of GitHub API

use dorny/paths-filter with git commands instead of GitHub API #1592

Run time

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Job Run time
editorconfig
11s
pytest-changes
6s
nf-test-changes
8s
prettier
36s
nf-core-lint (fastqc)
1m 7s
nf-core-lint (ffq)
1m 10s
nf-core-lint (flye)
1m 7s
nf-core-lint (gfastats)
1m 7s
pytest (fastqc, docker)
5m 32s
nf-core-lint (gfatools/gfa2fa)
1m 12s
pytest (fastqc, singularity)
9m 27s
nf-core-lint (gfatools/stat)
1m 16s
pytest (fastqc, conda)
15m 40s
nf-core-lint (goleft/indexcov)
1m 14s
pytest (ffq, docker)
1m 10s
nf-core-lint (metaphlan3/mergemetaphlantables)
1m 17s
pytest (ffq, singularity)
1m 58s
nf-core-lint (multiqc)
1m 34s
pytest (ffq, conda)
4m 2s
nf-core-lint (pairtools/merge)
59s
pytest (flye, docker)
11m 56s
nf-core-lint (pairtools/sort)
1m 30s
pytest (flye, singularity)
12m 16s
pytest (flye, conda)
18m 44s
nf-core-lint (sentieon/tnhaplotyper2)
1m 12s
pytest (gfastats, docker)
1m 32s
nf-core-lint (snakemake)
56s
pytest (gfastats, singularity)
2m 3s
pytest (gfastats, conda)
5m 15s
pytest (gfatools/gfa2fa, docker)
1m 0s
pytest (gfatools/gfa2fa, singularity)
1m 23s
pytest (gfatools/gfa2fa, conda)
2m 46s
pytest (gfatools/stat, docker)
1m 13s
pytest (gfatools/stat, singularity)
2m 9s
pytest (gfatools/stat, conda)
2m 35s
pytest (goleft/indexcov, docker)
47s
pytest (goleft/indexcov, singularity)
1m 2s
pytest (goleft/indexcov, conda)
2m 30s
pytest (metaphlan3/mergemetaphlantables, docker)
1m 25s
pytest (metaphlan3/mergemetaphlantables, singularity)
2m 53s
pytest (metaphlan3/mergemetaphlantables, conda)
4m 5s
pytest (multiqc, docker)
2m 2s
pytest (multiqc, singularity)
3m 8s
pytest (multiqc, conda)
5m 51s
pytest (pairtools/merge, docker)
1m 21s
pytest (pairtools/merge, singularity)
2m 31s
pytest (pairtools/merge, conda)
3m 16s
pytest (pairtools/sort, docker)
1m 0s
pytest (pairtools/sort, singularity)
1m 26s
pytest (pairtools/sort, conda)
2m 43s
pytest (sentieon/tnhaplotyper2, docker)
6m 13s
pytest (sentieon/tnhaplotyper2, singularity)
7m 36s
pytest (snakemake, docker)
1m 20s
pytest (snakemake, singularity)
2m 16s
pytest (snakemake, conda)
3m 48s
nf-test (custom/dumpsoftwareversions, docker)
35s
nf-test (custom/dumpsoftwareversions, singularity)
53s
nf-test (custom/sratoolsncbisettings, docker)
1m 50s
nf-test (custom/sratoolsncbisettings, singularity)
2m 12s
nf-test (custom/sratoolsncbisettings, conda)
5m 2s
nf-test (fastqc, docker)
45s
nf-test (fastqc, singularity)
59s
nf-test (fastqc, conda)
2m 19s
nf-test (snakemake, docker)
40s
nf-test (snakemake, singularity)
1m 0s
nf-test (snakemake, conda)
2m 31s
nf-test (sratools/fasterqdump, docker)
2m 3s
nf-test (sratools/fasterqdump, singularity)
3m 24s
nf-test (sratools/fasterqdump, conda)
5m 15s
nf-test (sratools/prefetch, docker)
1m 53s
nf-test (sratools/prefetch, singularity)
1m 59s
nf-test (sratools/prefetch, conda)
6m 10s
nf-test (subworkflows/nextflowpipelineutils, docker)
53s
nf-test (subworkflows/nextflowpipelineutils, singularity)
1m 21s
nf-test (subworkflows/nextflowpipelineutils, conda)
1m 48s
nf-test (fastq_download_prefetch_fasterqdump_sratools, docker)
1m 23s
nf-test (fastq_download_prefetch_fasterqdump_sratools, singularity)
2m 17s
nf-test (fastq_download_prefetch_fasterqdump_sratools, conda)
3m 51s
confirm-pass
4s
3h 45m 43s