build(#4078): Move conda environment to yml

nf-core · Oct 24, 2023 · 69ac995 · 69ac995
1 parent ef007b1
commit 69ac995
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diff --git a/modules/nf-core/bowtie/align/environment.yml b/modules/nf-core/bowtie/align/environment.yml
@@ -0,0 +1,9 @@
+name: nf-core-bowtie/align
+channels:
+  - conda-forge
+  - bioconda
+  - defaults
+
+dependencies:
+  - bioconda::bowtie=1.3.0
+  - bioconda::samtools=1.16.1
diff --git a/modules/nf-core/bowtie/align/main.nf b/modules/nf-core/bowtie/align/main.nf
@@ -2,7 +2,7 @@ process BOWTIE_ALIGN {
     tag "$meta.id"
     label 'process_high'
 
-    conda "bioconda::bowtie=1.3.0 bioconda::samtools=1.16.1"
+    conda "./environment.yml"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-ffbf83a6b0ab6ec567a336cf349b80637135bca3:c84c7c55c45af231883d9ff4fe706ac44c479c36-0' :
         'biocontainers/mulled-v2-ffbf83a6b0ab6ec567a336cf349b80637135bca3:c84c7c55c45af231883d9ff4fe706ac44c479c36-0' }"