Bump MultiQC to v1.13a (dev)

[apeltzer]

This bumps MultiQC to v1.13a, the dev version of MultiQC that should fix issues for smrnaseq and also some other pipelines where DupRadar (I think rnaseq? @drpatelh FYI) was used and the HTML report contained duplicated sections.

Can be used until there is a new proper V1.13 release as @ewels suggested 🥳

PR checklist

Closes #XXX

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the module conventions in the contribution docs
• If necessary, include test data in your PR.
• Remove all TODO statements.
• Emit the versions.yml file.
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
  • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
  • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

[JoseEspinosa]

I think the container has an issue and thus the test errors:

$ docker run -it quay.io/biocontainers/multiqc:1.13a--pyhdfd78af_0
# multiqc
Traceback (most recent call last):
  File "/usr/local/bin/multiqc", line 10, in <module>
    sys.exit(multiqc())
TypeError: 'module' object is not callable

[ewels]

Oh dear. Did your Conda release break MultiQC for everyone @apeltzer? 😱

[apeltzer]

I will fix this now, after baby sleeps. No idea what is the problem there but can overwrite build number after bugfixing ...

[apeltzer]

Ok, just opened new PR on bioconda and will try debugging locally whats going on there. Its odd but as far as I can see the only thing that I had to add was new url + sha256 sum + rich-click as dependency and nothing else ...?

[ewels]

Yeah I'm a bit worried that this is something bigger / upstream.. It smells like a Python name spacing issue.

[apeltzer]

bioconda/bioconda-recipes#35553 fixes this, will wait until recipes are there, then fix it and update this PR to get it to modules again - thanks for the help @ewels !

[JoseEspinosa]

Awesome @apeltzer! 🚀