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New module: wgsim #2178

Merged
merged 2 commits into from
Oct 8, 2022
Merged

New module: wgsim #2178

merged 2 commits into from
Oct 8, 2022

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priyanka-surana
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New module for software wgsim to simulate short read from genome fasta

PR checklist

Closes #XXX

  • [ x] This comment contains a description of changes (with reason).
  • [ x] If you've fixed a bug or added code that should be tested, add tests!
  • [ x] If you've added a new tool - have you followed the module conventions in the contribution docs
  • [ x] If necessary, include test data in your PR.
  • [ x] Remove all TODO statements.
  • [ x] Emit the versions.yml file.
  • [ x] Follow the naming conventions.
  • [ x] Follow the parameters requirements.
  • [ x] Follow the input/output options guidelines.
  • [ x] Add a resource label
  • [ x] Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • [ x] PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

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2 participants