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Update metromap
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luisas committed Sep 16, 2024
1 parent 1f5d264 commit 0a17722
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -33,6 +33,7 @@ Initial release of nf-core/multiplesequencealign, created with the [nf-core](htt
- [[#84](https://github.com/nf-core/multiplesequencealign/issues/84)] - Update Metromap.
- [[#139](https://github.com/nf-core/multiplesequencealign/pull/139)] - Add Foldmason.
- [[#146](https://github.com/nf-core/multiplesequencealign/pull/146)] - Only show additional process tags when they exists and use the same ubuntu version in all modules.
- [[#145](https://github.com/nf-core/multiplesequencealign/pull/145)] - Add consensus MSA.

### `Fixed`

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2 changes: 2 additions & 0 deletions docs/usage.md
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Expand Up @@ -60,6 +60,8 @@ The available ALIGN methods are listed below (those that accept guide trees are
- [MTMALIGN](https://bio.tools/mtm-align)
- [FOLDMASON](https://github.com/steineggerlab/foldmason)

Optionally, [M-COFFEE](https://tcoffee.org/Projects/mcoffee/index.html) will combine the output of all alignments into a consensus MSA (--build_consensus).

### 4. EVALUATE

Optionally, the produced MSAs can be evaluated. This step can be skipped using the `--skip_eval` parameter. The evaluations implemented are listed below.
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2 changes: 1 addition & 1 deletion nextflow_schema.json
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Expand Up @@ -64,7 +64,7 @@
"title": "Stats options",
"type": "object",
"fa_icon": "fas fa-terminal",
"description": "Define wether to run stats.",
"description": "Define extra alignment options.",
"properties": {
"build_consensus": {
"type": "boolean",
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