Merge pull request #152 from JoseEspinosa/fixes

Warning when kalign fails with error 132
nf-core · Sep 19, 2024 · adc2e94 · adc2e94
2 parents 9303a87 + 64a0eda
commit adc2e94
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -49,6 +49,7 @@ Initial release of nf-core/multiplesequencealign, created with the [nf-core](htt
 - [[#111](https://github.com/nf-core/multiplesequencealign/pull/111)] - Fix linting warnings (mostly versions).
 - [[#134](https://github.com/nf-core/multiplesequencealign/pull/134)] - Code revision for release preparation.
 - [[#138](https://github.com/nf-core/multiplesequencealign/pull/138)] - MultiQC as nf-core module and fix visualization.
+- [[#152](https://github.com/nf-core/multiplesequencealign/pull/152)] - Ignore kalign error 132 and print a warning (incompatibility with some CPU types).
 
 ### `Dependencies`
 

diff --git a/modules.json b/modules.json
@@ -44,7 +44,8 @@
                     "kalign/align": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": ["modules"]
+                        "installed_by": ["modules"],
+                        "patch": "modules/nf-core/kalign/align/kalign-align.diff"
                     },
                     "learnmsa/align": {
                         "branch": "master",

diff --git a/modules/nf-core/kalign/align/kalign-align.diff b/modules/nf-core/kalign/align/kalign-align.diff
diff --git a/modules/nf-core/kalign/align/main.nf b/modules/nf-core/kalign/align/main.nf