build: Add custom profiles #3
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| name: Build reference genomes that changed | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths: | |
| - 'assets/genomes/*.yml' | |
| jobs: | |
| run-tower: | |
| name: Run AWS full tests | |
| if: github.repository == 'nf-core/nascent' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Find changed genomes | |
| id: changed-genome-files | |
| uses: tj-actions/changed-files@v42 | |
| with: | |
| files: | | |
| assets/genomes/*.yml | |
| - name: Concatinate all the yamls together | |
| if: steps.changed-files-specific.outputs.any_changed == 'true' | |
| env: | |
| CHANGED_FILES: ${{ steps.changed-files-specific.outputs.all_changed_files }} | |
| run: cat ${CHANGED_FILES} > samplesheet.yml | |
| # - name: Upload samplesheet.yml to s3 or Tower Datasets | |
| # run: TODO | |
| - name: Launch workflow via tower | |
| uses: seqeralabs/action-tower-launch@v2 | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | |
| revision: ${{ github.sha }} | |
| workdir: s3://${{ secrets.AWS_S3_SCRATCH_BUCKET }}/work | |
| parameters: | | |
| { | |
| "input": "samplesheet.yml" | |
| "hook_url": "${{ secrets.MEGATESTS_ALERTS_SLACK_HOOK_URL }}", | |
| "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/nascent/results-${{ github.sha }}" | |
| } | |
| profiles: cloud | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: Tower debug log file | |
| path: | | |
| tower_action_*.log | |
| tower_action_*.json |