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Preprocessing from rnaseq #33

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Preprocessing from rnaseq

Preprocessing from rnaseq #33

Run time

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Job Run time
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5s
nf-test subworkflows/fastq_fastqc_umitools_fastp docker nf-23.10.0
45s
nf-test subworkflows/fastq_subsample_fq_salmon docker nf-23.10.0
50s
nf-test fq/subsample docker nf-23.10.0
1m 29s
nf-test rsem/preparereference docker nf-23.10.0
51s
nf-test salmon/quant docker nf-23.10.0
1m 32s
nf-test salmon/index docker nf-23.10.0
2m 44s
nf-test custom/getchromsizes docker nf-23.10.0
46s
nf-test multiqc docker nf-23.10.0
1m 5s
nf-test untar docker nf-23.10.0
53s
nf-test cutadapt docker nf-23.10.0
44s
nf-test gunzip docker nf-23.10.0
30s
nf-test kallisto/index docker nf-23.10.0
30s
nf-test gffread docker nf-23.10.0
41s
nf-test fastqc docker nf-23.10.0
2m 26s
nf-test cat/fastq docker nf-23.10.0
1m 24s
nf-test star/genomegenerate docker nf-23.10.0
58s
nf-test trimgalore docker nf-23.10.0
51s
nf-test hisat2/extractsplicesites docker nf-23.10.0
35s
nf-test hisat2/build docker nf-23.10.0
35s
nf-test umitools/extract docker nf-23.10.0
1m 4s
nf-test sortmerna docker nf-23.10.0
1m 1s
nf-test fastp docker nf-23.10.0
2m 49s
nf-test pipeline_riboseq docker nf-23.10.0
16m 49s
nf-test subworkflows/fastq_fastqc_umitools_fastp docker nf-latest-everything
38s
nf-test subworkflows/fastq_subsample_fq_salmon docker nf-latest-everything
53s
nf-test fq/subsample docker nf-latest-everything
1m 42s
nf-test rsem/preparereference docker nf-latest-everything
59s
nf-test salmon/quant docker nf-latest-everything
1m 30s
nf-test salmon/index docker nf-latest-everything
1m 10s
nf-test custom/getchromsizes docker nf-latest-everything
49s
nf-test multiqc docker nf-latest-everything
1m 2s
nf-test untar docker nf-latest-everything
54s
nf-test cutadapt docker nf-latest-everything
39s
nf-test gunzip docker nf-latest-everything
34s
nf-test kallisto/index docker nf-latest-everything
32s
nf-test gffread docker nf-latest-everything
47s
nf-test fastqc docker nf-latest-everything
2m 20s
nf-test cat/fastq docker nf-latest-everything
1m 11s
nf-test star/genomegenerate docker nf-latest-everything
59s
nf-test trimgalore docker nf-latest-everything
45s
nf-test hisat2/extractsplicesites docker nf-latest-everything
35s
nf-test hisat2/build docker nf-latest-everything
38s
nf-test umitools/extract docker nf-latest-everything
57s
nf-test sortmerna docker nf-latest-everything
55s
nf-test fastp docker nf-latest-everything
2m 48s
nf-test pipeline_riboseq docker nf-latest-everything
16m 45s
confirm-pass
1s
1h 22m 0s