Merge branch 'dev' into fusioninspector_nftest

nf-core · Dec 27, 2024 · 04ea2c9 · 04ea2c9
2 parents 8bc24f2 + c63fcb7
commit 04ea2c9
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -42,6 +42,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Move from ensembl to gencode base [#505](https://github.com/nf-core/rnafusion/pull/505)
 - Update from ensembl 102 to gencode 46 default references [#505](https://github.com/nf-core/rnafusion/pull/505)
 - Update`FUSIONINSPECTOR` to v2.10.0. [#601](https://github.com/nf-core/rnafusion/pull/601)
+- Remove local module `STARFUSION_DOWNLOAD` [#598](https://github.com/nf-core/rnafusion/pull/598)
 
 ### Fixed
 

diff --git a/conf/modules.config b/conf/modules.config
@@ -371,16 +371,6 @@ process {
         ext.args = "--max_readlength ${params.read_length} --human_gencode_filter"
     }
 
-    withName: 'STARFUSION_DOWNLOAD' {
-        cpus   = { 2    * task.attempt }
-        memory = { 24.GB * task.attempt }
-        time   = { 6.h  * task.attempt }
-        publishDir = [
-            path: { "${params.genomes_base}/starfusion" },
-            mode: params.publish_dir_mode,
-            saveAs: { filename -> filename.equals('versions.yml') ? null : filename },
-        ]
-    }
 
     withName: 'STRINGTIE_MERGE' {
         publishDir = [

diff --git a/modules/local/starfusion/download/environment.yml b/modules/local/starfusion/download/environment.yml
diff --git a/modules/local/starfusion/download/main.nf b/modules/local/starfusion/download/main.nf
diff --git a/modules/local/starfusion/download/meta.yml b/modules/local/starfusion/download/meta.yml