Merge pull request #444 from nf-core/fix_collectinsertsize

add conditions for collectinsertsize running
nf-core · Nov 24, 2023 · 2e4a8ce · 2e4a8ce
2 parents 7951b32 + dead314
commit 2e4a8ce
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -28,6 +28,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - Fix channel i/o issue in StringTie workflow and add StringTie in github CI tests [#416](https://github.com/nf-core/rnafusion/pull/416)
 - Updated COSMIC database to fix 404 error while downloading fusionreport references [#420](https://github.com/nf-core/rnafusion/pull/420)
+- Add 'when' condition to run collectinsertsize [#444](https://github.com/nf-core/rnafusion/pull/444)
 
 ### Removed
 

diff --git a/conf/modules.config b/conf/modules.config
@@ -165,6 +165,7 @@ process {
     }
 
     withName: PICARD_COLLECTINSERTSIZEMETRICS {
+        ext.when         = { !params.skip_qc && !params.fusioninspector_only && (params.starfusion || params.all) }
         ext.prefix       = { "${meta.id}_collectinsertsize"}
         publishDir = [
             path: { "${params.outdir}/picard" },