Skip to content
nf-core CI

Kallisto quantification #1970

Sign in to view logs

Kallisto quantification

Kallisto quantification #1970

Run time

Learn about OS pricing on GitHub Actions
Job Run time
Run pipeline with test data (23.04.0)
48s
Run pipeline with test data (23.04.0)
39s
Run pipeline with test data (23.04.0)
46s
Run pipeline with test data (23.04.0)
1m 4s
Run pipeline with test data (23.04.0)
11m 0s
Test STAR RSEM with workflow parameters (--skip_qc)
40s
Test STAR RSEM with workflow parameters (--skip_qc)
33s
Test STAR RSEM with workflow parameters (--skip_qc)
38s
Test STAR RSEM with workflow parameters (--skip_qc)
43s
Test STAR RSEM with workflow parameters (--skip_qc)
7m 7s
Run pipeline with test data (latest-everything)
40s
Run pipeline with test data (latest-everything)
45s
Run pipeline with test data (latest-everything)
36s
Run pipeline with test data (latest-everything)
46s
Run pipeline with test data (latest-everything)
19m 25s
Test HISAT2 with workflow parameters (--skip_qc)
39s
Test HISAT2 with workflow parameters (--skip_qc)
36s
Test HISAT2 with workflow parameters (--skip_qc)
29s
Test HISAT2 with workflow parameters (--skip_qc)
35s
Test HISAT2 with workflow parameters (--skip_qc)
6m 37s
Test STAR RSEM with workflow parameters (--rsem_index false)
43s
Test STAR RSEM with workflow parameters (--rsem_index false)
31s
Test STAR RSEM with workflow parameters (--rsem_index false)
39s
Test STAR RSEM with workflow parameters (--rsem_index false)
59s
Test STAR RSEM with workflow parameters (--rsem_index false)
9m 58s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
33s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
38s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
45s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
54s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_qc)
7m 58s
Test HISAT2 with workflow parameters (--hisat2_index false)
46s
Test HISAT2 with workflow parameters (--hisat2_index false)
53s
Test HISAT2 with workflow parameters (--hisat2_index false)
29s
Test HISAT2 with workflow parameters (--hisat2_index false)
52s
Test HISAT2 with workflow parameters (--hisat2_index false)
16m 34s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
34s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
31s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
38s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
42s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --skip_alignment --skip_pse...
3m 29s
Test STAR Salmon with workflow parameters (--skip_qc)
38s
Test STAR Salmon with workflow parameters (--skip_qc)
42s
Test STAR Salmon with workflow parameters (--skip_qc)
44s
Test STAR Salmon with workflow parameters (--skip_qc)
38s
Test STAR Salmon with workflow parameters (--skip_qc)
18m 31s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
41s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
39s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
30s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
34s
Test Pseudoaligners with workflow parameters (--pseudo_aligner salmon --salmon_index false --tran...
11m 8s
Test STAR Salmon with workflow parameters (--skip_trimming)
45s
Test STAR Salmon with workflow parameters (--skip_trimming)
37s
Test STAR Salmon with workflow parameters (--skip_trimming)
38s
Test STAR Salmon with workflow parameters (--skip_trimming)
35s
Test STAR Salmon with workflow parameters (--skip_trimming)
10m 3s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
39s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
39s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
30s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
35s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_qc)
8m 1s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
49s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
35s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
35s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
43s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --skip_alignment --skip_p...
3m 38s
Test STAR Salmon with workflow parameters (--gtf false)
46s
Test STAR Salmon with workflow parameters (--gtf false)
33s
Test STAR Salmon with workflow parameters (--gtf false)
47s
Test STAR Salmon with workflow parameters (--gtf false)
44s
Test STAR Salmon with workflow parameters (--gtf false)
11m 6s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
44s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
35s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
30s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
53s
Test Pseudoaligners with workflow parameters (--pseudo_aligner kallisto --kallisto_index false --...
11m 10s
Test STAR Salmon with workflow parameters (--star_index false)
31s
Test STAR Salmon with workflow parameters (--star_index false)
29s
Test STAR Salmon with workflow parameters (--star_index false)
46s
Test STAR Salmon with workflow parameters (--star_index false)
44s
Test STAR Salmon with workflow parameters (--star_index false)
10m 38s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
42s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
33s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
33s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
45s
Test STAR Salmon with workflow parameters (--transcript_fasta false)
10m 40s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
37s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
34s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
44s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
44s
Test STAR Salmon with workflow parameters (--min_mapped_reads 90)
10m 38s
Test STAR Salmon with workflow parameters (--with_umi)
36s
Test STAR Salmon with workflow parameters (--with_umi)
35s
Test STAR Salmon with workflow parameters (--with_umi)
34s
Test STAR Salmon with workflow parameters (--with_umi)
31s
Test STAR Salmon with workflow parameters (--with_umi)
11m 42s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
38s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
28s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
35s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
30s
Test STAR Salmon with workflow parameters (--with_umi --skip_trimming)
11m 32s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
2m 19s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
29s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
42s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
28s
Test STAR Salmon with workflow parameters (--remove_ribo_rna --skip_qualimap)
18m 2s
Test STAR Salmon with workflow parameters (--bam_csi_index)
37s
Test STAR Salmon with workflow parameters (--bam_csi_index)
31s
Test STAR Salmon with workflow parameters (--bam_csi_index)
47s
Test STAR Salmon with workflow parameters (--bam_csi_index)
45s
Test STAR Salmon with workflow parameters (--bam_csi_index)
10m 24s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
43s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
42s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
32s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
47s
Test STAR Salmon with workflow parameters (--save_align_intermeds --save_reference)
10m 33s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
40s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
30s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
36s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
32s
Test STAR Salmon with workflow parameters (--featurecounts_group_type false)
11m 1s
Test STAR Salmon with workflow parameters (--trimmer fastp)
47s
Test STAR Salmon with workflow parameters (--trimmer fastp)
43s
Test STAR Salmon with workflow parameters (--trimmer fastp)
30s
Test STAR Salmon with workflow parameters (--trimmer fastp)
38s
Test STAR Salmon with workflow parameters (--trimmer fastp)
10m 8s
5h 37m 52s