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update snapshots
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@maxulysse
maxulysse committed Sep 18, 2024
1 parent 4811e91 commit 30d629b
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Showing 3 changed files with 22 additions and 25 deletions.
20 changes: 10 additions & 10 deletions tests/hisat2.nf.test.snap
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Expand Up @@ -604,6 +604,11 @@
"multiqc_rseqc_junction_annotation.txt",
"multiqc_rseqc_read_distribution.txt",
"multiqc_salmon.txt",
"multiqc_salmon_deseq2_clustering-plot.txt",
"multiqc_salmon_deseq2_clustering-plot_1.txt",
"multiqc_salmon_deseq2_clustering-plot_2.txt",
"multiqc_salmon_deseq2_clustering-plot_3.txt",
"multiqc_salmon_deseq2_clustering-plot_4.txt",
"multiqc_salmon_deseq2_pca-plot.txt",
"multiqc_samtools_flagstat.txt",
"multiqc_samtools_stats.txt",
Expand Down Expand Up @@ -665,6 +670,10 @@
"featurecounts_biotype_plot-cnt.pdf",
"featurecounts_biotype_plot-pct.pdf",
"general_stats_table.pdf",
"hisat2_pe_plot-cnt.pdf",
"hisat2_pe_plot-pct.pdf",
"hisat2_se_plot-cnt.pdf",
"hisat2_se_plot-pct.pdf",
"picard_deduplication-cnt.pdf",
"picard_deduplication-pct.pdf",
"qualimap_gene_coverage_profile_Counts.pdf",
Expand Down Expand Up @@ -1086,11 +1095,6 @@
"multiqc_fastqc_fastqc_raw.txt:md5,81c3c1a2575a1891a7f2a9637a0f2cc0",
"multiqc_fastqc_fastqc_trimmed.txt:md5,a3238f515e01d158d875d69968753804",
"multiqc_featurecounts_biotype_plot.txt:md5,d35ad008181f0f7be84d5770d17a3a65",
"multiqc_salmon_deseq2_clustering-plot.txt:md5,c39fd219828df33259e48aadcdd1997c",
"multiqc_salmon_deseq2_clustering-plot_1.txt:md5,6ccabfcdd11d36e140a7d6615c73ae85",
"multiqc_salmon_deseq2_clustering-plot_2.txt:md5,792ce8a58aefbbd10c0f182fcbc37c7a",
"multiqc_salmon_deseq2_clustering-plot_3.txt:md5,3080d13dee6e437084f27937296ede8a",
"multiqc_salmon_deseq2_clustering-plot_4.txt:md5,c750d2fa8d6dc8a2370335a71d2fa637",
"multiqc_samtools_idxstats.txt:md5,66a8e8aecb6233f5a3521151b1ce8d49",
"picard_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
"picard_histogram_1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
Expand All @@ -1102,10 +1106,6 @@
"samtools-idxstats-mapped-reads-plot_Normalised_Counts.txt:md5,75acd04232d1804b5f960ee4c5db4722",
"samtools-idxstats-mapped-reads-plot_Observed_over_Expected_Counts.txt:md5,3625f666cc09d0f07990716aeccd869f",
"samtools-idxstats-mapped-reads-plot_Raw_Counts.txt:md5,6c323b383a6506d124506405b9463d93",
"hisat2_pe_plot-cnt.pdf:md5,597b9758f57712f66956d1065f72f68c",
"hisat2_pe_plot-pct.pdf:md5,6baadc07e1d4b51a872fdf288d3a5dcd",
"hisat2_se_plot-cnt.pdf:md5,ad78c3a76df184a45d0b9f905ed979d0",
"hisat2_se_plot-pct.pdf:md5,60a38be9382dbf103bb0832c2f1bca6c",
"cutadapt_trimmed_sequences_plot_3_Counts.png:md5,bef41d894629b0c4dab4478bbf197f50",
"cutadapt_trimmed_sequences_plot_3_Obs_Exp.png:md5,1e0d01537d3797623d0b3fd8fbe42787",
"dupradar-section-plot.png:md5,6074ea2315d296094bd10fad3dcc475b",
Expand Down Expand Up @@ -1175,6 +1175,6 @@
"nf-test": "0.9.0",
"nextflow": "24.04.4"
},
"timestamp": "2024-09-18T14:05:59.799519"
"timestamp": "2024-09-18T15:04:27.247526"
}
}
11 changes: 4 additions & 7 deletions tests/lib/UTILS.groovy
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Expand Up @@ -110,7 +110,7 @@ class UTILS {
/general_stats_table\.pdf/,
/general_stats_table\.png/,
/general_stats_table\.svg/,
/hisat2_(pe|se)_plot-(cnt|pct)\.(png|svg)/,
/hisat2_(pe|se)_plot-(cnt|pct)\.(pdf|png|svg)/,
/hisat2_pe_plot\.txt/,
/hisat2_se_plot.*\.(png|svg)/,
/junction_saturation_known\.txt/,
Expand All @@ -133,17 +133,14 @@ class UTILS {
/multiqc_rseqc_junction_annotation\.txt/,
/multiqc_rseqc_read_distribution\.txt/,
/multiqc_salmon\.txt/,
/(star_rsem|multiqc_salmon)_deseq2_clustering-plot-\.txt/,
/(star_rsem|multiqc_salmon)_deseq2_clustering_-lot_-.*\.txt/,
/multiqc_salmon_deseq2_pca-plot\.txt/,
/(star_rsem|multiqc_salmon|multiqc_star_salmon)_deseq2_clustering-plot.*\.(pdf|png|txt)/,
/multiqc_salmon_deseq2_pca-plot.*\.txt/,
/multiqc_samtools_flagstat\.txt/,
/multiqc_samtools_stats\.txt/,
/multiqc_software_versions\.txt/,
/multiqc_sortmerna\.txt/,
/multiqc_sources\.txt/,
/multiqc_star\.txt/,
/(star_rsem|multiqc_star_salmon)_deseq2_clustering-plot-\.txt/,
/(star_rsem|multiqc_star_salmon)_deseq2_clustering_-lot_-.*\.txt/,
/multiqc_star_salmon_deseq2_pca-plot\.txt/,
/picard_deduplication-cnt\.pdf/,
/picard_deduplication-cnt\.png/,
Expand All @@ -165,7 +162,7 @@ class UTILS {
/qualimap_genomic_origin\.txt/,
/qualimap_rnaseq_genome_results\.txt/,
/rsem_assignment_plot\.txt/,
/rsem_assignment_plot-(cnt|pct)\.(pdf|svg)/,
/rsem_assignment_plot-(cnt|pct)\.(pdf|png|svg)/,
/rsem_multimapping_rates\.(pdf|svg|txt)/,
/rseqc_bam_stat\.pdf/,
/rseqc_bam_stat\.png/,
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16 changes: 8 additions & 8 deletions tests/star_rsem.nf.test.snap
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Expand Up @@ -200,6 +200,11 @@
"multiqc_rseqc_junction_annotation.txt",
"multiqc_rseqc_read_distribution.txt",
"multiqc_salmon.txt",
"multiqc_salmon_deseq2_clustering-plot.txt",
"multiqc_salmon_deseq2_clustering-plot_1.txt",
"multiqc_salmon_deseq2_clustering-plot_2.txt",
"multiqc_salmon_deseq2_clustering-plot_3.txt",
"multiqc_salmon_deseq2_clustering-plot_4.txt",
"multiqc_salmon_deseq2_pca-plot.txt",
"multiqc_samtools_flagstat.txt",
"multiqc_samtools_stats.txt",
Expand Down Expand Up @@ -319,6 +324,8 @@
"picard_deduplication-pct.png",
"qualimap_genomic_origin-cnt.png",
"qualimap_genomic_origin-pct.png",
"rsem_assignment_plot-cnt.png",
"rsem_assignment_plot-pct.png",
"rseqc_bam_stat.png",
"rseqc_inner_distance_plot_Counts.png",
"rseqc_inner_distance_plot_Percentages.png",
Expand Down Expand Up @@ -894,11 +901,6 @@
"multiqc_fastqc_fastqc_raw.txt:md5,81c3c1a2575a1891a7f2a9637a0f2cc0",
"multiqc_fastqc_fastqc_trimmed.txt:md5,a3238f515e01d158d875d69968753804",
"multiqc_featurecounts_biotype_plot.txt:md5,27bb37d346e8f0960c882a3676e219e8",
"multiqc_salmon_deseq2_clustering-plot.txt:md5,f5d583266ecc0d0eaddb7a8362405164",
"multiqc_salmon_deseq2_clustering-plot_1.txt:md5,2a1097fe03e12542dd198ed805ba108a",
"multiqc_salmon_deseq2_clustering-plot_2.txt:md5,5f7195951fd89a62b45d16991d0c83d0",
"multiqc_salmon_deseq2_clustering-plot_3.txt:md5,eab5db39f3ee13163329402a87cafd21",
"multiqc_salmon_deseq2_clustering-plot_4.txt:md5,c3287dd65316b9afb54f2c3f6931fa51",
"multiqc_samtools_idxstats.txt:md5,1cbc64fc9713831a6f45effc0cfe6a39",
"multiqc_star_rsem_deseq2_clustering-plot.txt:md5,62bd581d9ea4cc3fb2dbddeb82238ed2",
"multiqc_star_rsem_deseq2_clustering-plot_1.txt:md5,acd14c14552684ef5783a490de0bc704",
Expand Down Expand Up @@ -939,8 +941,6 @@
"featurecounts_biotype_plot-pct.png:md5,1921c3931d871f8326a6a6c5c8278815",
"qualimap_gene_coverage_profile_Counts.png:md5,04a262d5af169d6d771e48555adab37e",
"qualimap_gene_coverage_profile_Normalised.png:md5,3bddc4f2a7d462996628e33daf490247",
"rsem_assignment_plot-cnt.png:md5,15fd495eeee0d791d8fe663c9a981b6a",
"rsem_assignment_plot-pct.png:md5,e38d64af2acd404fcdb72a55a6dd1986",
"rsem_multimapping_rates.png:md5,e93d35b86e1be681eae9b6ad19e12350",
"rseqc_infer_experiment_plot.png:md5,1a3a792e9a6e0c0f93c082594b24e566",
"rseqc_read_dups_plot.png:md5,b79c01ce4697ebb7e0ebb4a3da5b44f7",
Expand Down Expand Up @@ -1143,7 +1143,7 @@
"nf-test": "0.9.0",
"nextflow": "24.04.4"
},
"timestamp": "2024-09-18T14:27:07.132344"
"timestamp": "2024-09-18T15:11:45.123849"
},
"Params: --aligner star_rsem - stub": {
"content": [
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