Merge pull request #1251 from adamrtalbot/deseq2qc_test_data

Replace deseq2qc paths
nf-core · Mar 11, 2024 · 37588d2 · 37588d2
2 parents cd6d5ac + 41b142a
commit 37588d2
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Showing 4 changed files with 4 additions and 45 deletions.
diff --git a/modules/local/deseq2_qc/tests/data/countFile.tsv b/modules/local/deseq2_qc/tests/data/countFile.tsv
diff --git a/modules/local/deseq2_qc/tests/data/deseq2_clustering_header.txt b/modules/local/deseq2_qc/tests/data/deseq2_clustering_header.txt
diff --git a/modules/local/deseq2_qc/tests/data/deseq2_pca_header.txt b/modules/local/deseq2_qc/tests/data/deseq2_pca_header.txt
diff --git a/modules/local/deseq2_qc/tests/main.nf.test b/modules/local/deseq2_qc/tests/main.nf.test
@@ -9,10 +9,10 @@ nextflow_process {
         when {
             process {
                 """
-                input[0] = file("${moduleTestDir}/data/countFile.tsv")
-                input[1] = file("${moduleTestDir}/data/deseq2_pca_header.txt")
-                input[2] = file("${moduleTestDir}/data/deseq2_clustering_header.txt")
-                """.stripIndent().trim()
+                input[0] = file(params.pipelines_testdata_base_path + "deseq2qc/countFile.tsv", checkIfExists: true)
+                input[1] = file(params.pipelines_testdata_base_path + "deseq2qc/deseq2_pca_header.txt", checkIfExists: true)
+                input[2] = file(params.pipelines_testdata_base_path + "deseq2qc/deseq2_clustering_header.txt", checkIfExists: true)
+                """
             }
         }