Revert renaming UMITOOLS_PREPAREFORSALMON to UMITOOLS_PREPAREFORRSEM

nf-core · Mar 13, 2024 · 9584d70 · 9584d70
1 parent 798acea
commit 9584d70
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/workflows/rnaseq/main.nf b/workflows/rnaseq/main.nf
@@ -40,16 +40,16 @@ include { CAT_FASTQ               } from '../../modules/nf-core/cat/fastq'
 include { BBMAP_BBSPLIT           } from '../../modules/nf-core/bbmap/bbsplit'
 include { DUPRADAR                } from '../../modules/nf-core/dupradar'
 include { SAMTOOLS_SORT           } from '../../modules/nf-core/samtools/sort'
-include { UMITOOLS_PREPAREFORRSEM } from '../../modules/nf-core/umitools/prepareforrsem'
 include { PRESEQ_LCEXTRAP         } from '../../modules/nf-core/preseq/lcextrap'
 include { QUALIMAP_RNASEQ         } from '../../modules/nf-core/qualimap/rnaseq'
 include { STRINGTIE_STRINGTIE     } from '../../modules/nf-core/stringtie/stringtie'
 include { SUBREAD_FEATURECOUNTS   } from '../../modules/nf-core/subread/featurecounts'
 include { MULTIQC                 } from '../../modules/nf-core/multiqc'
-include { SORTMERNA                                    } from '../../modules/nf-core/sortmerna'
-include { SORTMERNA as SORTMERNA_INDEX                 } from '../../modules/nf-core/sortmerna'
-include { BEDTOOLS_GENOMECOV as BEDTOOLS_GENOMECOV_FW  } from '../../modules/nf-core/bedtools/genomecov'
-include { BEDTOOLS_GENOMECOV as BEDTOOLS_GENOMECOV_REV } from '../../modules/nf-core/bedtools/genomecov'
+include { UMITOOLS_PREPAREFORRSEM as UMITOOLS_PREPAREFORSALMON } from '../../modules/nf-core/umitools/prepareforrsem'
+include { SORTMERNA                                            } from '../../modules/nf-core/sortmerna'
+include { SORTMERNA as SORTMERNA_INDEX                         } from '../../modules/nf-core/sortmerna'
+include { BEDTOOLS_GENOMECOV as BEDTOOLS_GENOMECOV_FW          } from '../../modules/nf-core/bedtools/genomecov'
+include { BEDTOOLS_GENOMECOV as BEDTOOLS_GENOMECOV_REV         } from '../../modules/nf-core/bedtools/genomecov'
 
 //
 // SUBWORKFLOW: Consisting entirely of nf-core/modules