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multiqc fails to run with --skipBiotypeQC option #353

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drejom opened this issue Dec 4, 2019 · 0 comments
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multiqc fails to run with --skipBiotypeQC option #353

drejom opened this issue Dec 4, 2019 · 0 comments
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@drejom
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drejom commented Dec 4, 2019

The pipeline runs without error, but the MultiQC process doesn't run with this option in effect.

Seems this is because of a missing .ifEmpty([]) suffix at

rnaseq/main.nf

Line 1666 in 3b6df9b

file ('featureCounts_biotype/*') from featureCounts_biotype.collect()

@drejom drejom self-assigned this Dec 4, 2019
@drejom drejom added the bug Something isn't working label Dec 4, 2019
@drejom drejom removed their assignment Dec 4, 2019
apeltzer added a commit that referenced this issue Dec 5, 2019
@apeltzer
Merge pull request #354 from drejom/dev
aebdb24 
Fixes an issue where multiqc wont run with `--skipBiotypeQC` option (#353)
@apeltzer apeltzer closed this as completed Dec 5, 2019
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@drejom @apeltzer