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nf-test: utils_nfcore_rnaseq_pipeline tests #1235

Merged
merged 8 commits into from
Mar 6, 2024
Merged

nf-test: utils_nfcore_rnaseq_pipeline tests #1235

merged 8 commits into from
Mar 6, 2024

Commits on Mar 6, 2024

  1. Add nf-tests for nf-core/rnaseq utility functions 

    Changes:
 - Change function name from validateInputSamplesheet to checkSamplesAreConsistent to accurately reflect what the function is doing
 - Add nf-tests for all functions in UTILS_NFCORE_RNASEQ_PIPELINE
    @adamrtalbot
    adamrtalbot committed Mar 6, 2024
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  2. Adds tests for nf-core/rnaseq utility subworkflows 

    Changes:
 - Makes nextflow_schema.json a parameter so we can actually set it. Not exposed right now but will be.
 - Adds basic tests that check for correct running only. Defaults to lots of stuff off.

We should extend this to check for more things but we're in a rush right now.
    @adamrtalbot
    adamrtalbot committed Mar 6, 2024
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  3. Merge branch 'dev' into nf-test-utils_nfcore_rnaseq_pipeline

    @adamrtalbot
    adamrtalbot authored Mar 6, 2024
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  4. Fix using schema variable correctly in PIPELINE_COMPLETION

    @adamrtalbot
    adamrtalbot committed Mar 6, 2024
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  5. test tidy

    @adamrtalbot
    adamrtalbot committed Mar 6, 2024
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  6. Update subworkflows/local/utils_nfcore_rnaseq_pipeline/main.nf

    @adamrtalbot
    adamrtalbot authored Mar 6, 2024
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  7. Merge branch 'dev' into nf-test-utils_nfcore_rnaseq_pipeline

    @adamrtalbot
    adamrtalbot authored Mar 6, 2024
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  8. fix snap

    @adamrtalbot
    adamrtalbot committed Mar 6, 2024
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