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Add missing files from Tximport processing #1302

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May 16, 2024
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1 change: 1 addition & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -69,6 +69,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
- [PR #1283](https://github.com/nf-core/rnaseq/pull/1283) - Add output files to nf-test snapshot
- [PR #1293](https://github.com/nf-core/rnaseq/pull/1293) - Update subworkflow utils_nfcore_pipeline
- [PR #1297](https://github.com/nf-core/rnaseq/pull/1297) - Important! Template update for nf-core/tools v2.14.1
- [PR #1302](https://github.com/nf-core/rnaseq/pull/1302) - Add missing files from Tximport processing

### Parameters

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8 changes: 4 additions & 4 deletions modules.json
Original file line number Diff line number Diff line change
Expand Up @@ -167,7 +167,7 @@
},
"salmon/quant": {
"branch": "master",
"git_sha": "03a8562231d575c313266c193a980594b941e3ea",
"git_sha": "cb6b2b94fc40dea58f0b1e3dd095f3dd24f2ac8a",
"installed_by": ["fastq_subsample_fq_salmon", "modules", "quantify_pseudo_alignment"]
},
"samtools/flagstat": {
Expand Down Expand Up @@ -226,7 +226,7 @@
},
"summarizedexperiment/summarizedexperiment": {
"branch": "master",
"git_sha": "05a252a330273c67795aed2b18e86c53c4c9382a",
"git_sha": "31751460f9ce9552846e13fdeec6953dcb47132d",
"installed_by": ["modules", "quantify_pseudo_alignment"]
},
"trimgalore": {
Expand All @@ -236,7 +236,7 @@
},
"tximeta/tximport": {
"branch": "master",
"git_sha": "c275c3baac6df8f0c7c500760a0cf014ce7b525d",
"git_sha": "689323f8f89a120469b4c898cf7f19f758c3080e",
"installed_by": ["modules", "quantify_pseudo_alignment"]
},
"ucsc/bedclip": {
Expand Down Expand Up @@ -329,7 +329,7 @@
},
"quantify_pseudo_alignment": {
"branch": "master",
"git_sha": "bca4985339b3ba879f457565806deb2377873b83",
"git_sha": "0c3275555f670ac32270175390a14fa676404bac",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
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12 changes: 12 additions & 0 deletions modules/nf-core/salmon/quant/main.nf

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142 changes: 141 additions & 1 deletion modules/nf-core/salmon/quant/tests/main.nf.test

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75 changes: 75 additions & 0 deletions modules/nf-core/salmon/quant/tests/main.nf.test.snap

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4 changes: 4 additions & 0 deletions modules/nf-core/tximeta/tximport/main.nf

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