Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Various MultiQC issues: FastQC sections for raw and trimmed reads // umi-tools dedup and extraction plots, custom content styling. #1308

Merged
merged 21 commits into from
Jul 12, 2024

Commits on Jul 4, 2024

  1. Configuration menu
    Copy the full SHA
    a2443e7 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    00d6113 View commit details
    Browse the repository at this point in the history
  3. Linting.

    MatthiasZepper committed Jul 4, 2024
    Configuration menu
    Copy the full SHA
    7dade35 View commit details
    Browse the repository at this point in the history
  4. Use the correct module names to supress the Percent Duplicate column …

    …in the General Stats table of MultiQC.
    MatthiasZepper committed Jul 4, 2024
    Configuration menu
    Copy the full SHA
    1bf9390 View commit details
    Browse the repository at this point in the history
  5. Configuration menu
    Copy the full SHA
    850cb4c View commit details
    Browse the repository at this point in the history
  6. Configuration menu
    Copy the full SHA
    2cb8eff View commit details
    Browse the repository at this point in the history
  7. Configuration menu
    Copy the full SHA
    6648b35 View commit details
    Browse the repository at this point in the history
  8. Configuration menu
    Copy the full SHA
    2924f9e View commit details
    Browse the repository at this point in the history
  9. Configuration menu
    Copy the full SHA
    8a4aa8a View commit details
    Browse the repository at this point in the history
  10. The output channel of fastq_fastqc_umitools_trimgalore/fastp is calle…

    …d 'umi_log' and not 'log'. The meta.yml is wrong.
    MatthiasZepper committed Jul 4, 2024
    Configuration menu
    Copy the full SHA
    af1b91c View commit details
    Browse the repository at this point in the history
  11. Configuration menu
    Copy the full SHA
    df31182 View commit details
    Browse the repository at this point in the history
  12. @aanil (Anandashankar Anil) correctly pointed out that some MultiQC c…

    …onfiguration parameters used in the config were deprecated.
    MatthiasZepper committed Jul 4, 2024
    Configuration menu
    Copy the full SHA
    8bca15a View commit details
    Browse the repository at this point in the history
  13. Linting

    MatthiasZepper committed Jul 4, 2024
    Configuration menu
    Copy the full SHA
    6178e8c View commit details
    Browse the repository at this point in the history
  14. Changelog

    MatthiasZepper committed Jul 4, 2024
    Configuration menu
    Copy the full SHA
    4dc5b67 View commit details
    Browse the repository at this point in the history

Commits on Jul 9, 2024

  1. Undo changes to modules/nf-core/dupradar/templates/dupradar.r from Ha…

    …rshil Patel and me, since they should be fixed upstream in the modules directory. Reset state of file to cc1bf2c.
    MatthiasZepper committed Jul 9, 2024
    Configuration menu
    Copy the full SHA
    4555a27 View commit details
    Browse the repository at this point in the history

Commits on Jul 10, 2024

  1. Configuration menu
    Copy the full SHA
    5f3c471 View commit details
    Browse the repository at this point in the history
  2. Correct the diff

    pinin4fjords committed Jul 10, 2024
    Configuration menu
    Copy the full SHA
    1931c05 View commit details
    Browse the repository at this point in the history
  3. Configuration menu
    Copy the full SHA
    9230216 View commit details
    Browse the repository at this point in the history

Commits on Jul 11, 2024

  1. Configuration menu
    Copy the full SHA
    8e42ab1 View commit details
    Browse the repository at this point in the history
  2. Configuration menu
    Copy the full SHA
    d2d21cf View commit details
    Browse the repository at this point in the history
  3. Fix prefixes for FASTQC

    pinin4fjords committed Jul 11, 2024
    Configuration menu
    Copy the full SHA
    1c75669 View commit details
    Browse the repository at this point in the history