Initialise args for umitools extract #502
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mashehu
approved these changes
Nov 23, 2020
edmundmiller
approved these changes
Nov 23, 2020
drpatelh
commented
Nov 23, 2020
| @@ -13,7 +13,7 @@ params.summary_params = [:] | |||
| */ | |||
| // Check if genome exists in the config file | |||
| if (params.genomes && params.genome && !params.genomes.containsKey(params.genome)) { | |||
| exit 1, "The provided genome '${params.genome}' is not available in the iGenomes file. Currently the available genomes are ${params.genomes.keySet().join(", ")}" | |||
| exit 1, "Genome '${params.genome}' was not found in any config files made available to the pipeline. Currently, the available genomes are ${params.genomes.keySet().join(", ")}" | |||
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This was reported in nf-core/atacseq#126 but fixing here because it will eventually be propagated to the pipeline template and then out to each of these pipelines when the DSL2 pipeline template is eventually released.
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