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update changelog
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ggabernet committed May 7, 2020
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Expand Up @@ -24,7 +24,7 @@ Piellorieppe is one of the main massif in the Sarek National Park.
- [#174](https://github.com/nf-core/sarek/pull/174) - Add `variant_calling.md` documentation
- [#175](https://github.com/nf-core/sarek/pull/175) - Add `Sentieon` documentation
- [#176](https://github.com/nf-core/sarek/pull/176) - Add empty `custom` genome in `genomes.config` to allow genomes that are not in `AWS iGenomes`
- [#179](https://github.com/nf-core/sarek/pull/179) - Add `FreeBayes` germline variant calling
- [#179](https://github.com/nf-core/sarek/pull/179), [#201](https://github.com/nf-core/sarek/pull/201) - Add `FreeBayes` germline variant calling
- [#180](https://github.com/nf-core/sarek/pull/180) - Now saving Mapped BAMs (and creating TSV) in minimal setting
- [#182](https://github.com/nf-core/sarek/pull/182) - Add possibility to run `HaplotypeCaller` without `dbsnp` so it can be used to actually generate vcfs to build a set of known sites (cf [gatkforums](https://gatkforums.broadinstitute.org/gatk/discussion/1247/what-should-i-use-as-known-variants-sites-for-running-tool-x))
- [#195](https://github.com/nf-core/sarek/pull/195) - Now creating TSV for duplicates marked BAMs in minimal setting
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