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nf-core · Sep 25, 2019 · 3b98c88 · 3b98c88
1 parent 584b3b2
commit 3b98c88
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/conf/genomes.config b/conf/genomes.config
@@ -39,8 +39,8 @@ params {
       dict                  = "${params.genomes_base}/Homo_sapiens_assembly38.dict"
       fasta                 = "${params.genomes_base}/Homo_sapiens_assembly38.fasta"
       fastaFai              = "${params.genomes_base}/Homo_sapiens_assembly38.fasta.fai"
-      germlineResource      = "${params.genomes_base}/GCF_000001405.38.AUTOSOMESXY.COMMON.BIALLELIC.SNPs.with.AF.vcf.gz"
-      germlineResourceIndex = "${params.genomes_base}/GCF_000001405.38.AUTOSOMESXY.COMMON.BIALLELIC.SNPs.with.AF.vcf.gz.tbi"
+      germlineResource      = "${params.genomes_base}/gnomAD.r2.1.1.GRCh38.PASS.AC.AF.only.vcf.gz"
+      germlineResourceIndex = "${params.genomes_base}/gnomAD.r2.1.1.GRCh38.PASS.AC.AF.only.vcf.gz.tbi"
       intervals             = "${params.genomes_base}/wgs_calling_regions.hg38.bed"
       knownIndels           = "${params.genomes_base}/{Mills_and_1000G_gold_standard.indels.hg38,beta/Homo_sapiens_assembly38.known_indels}.vcf.gz"
       knownIndelsIndex      = "${params.genomes_base}/{Mills_and_1000G_gold_standard.indels.hg38,beta/Homo_sapiens_assembly38.known_indels}.vcf.gz.tbi"