update config with changed module and sw names

nf-core · Dec 8, 2021 · 5061cbc · 5061cbc
1 parent 06d100b
commit 5061cbc
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/conf/modules.config b/conf/modules.config
@@ -347,7 +347,7 @@ process {
         publishDir        = [ enabled: false ]
     }
 
-    withName: 'BGZIPTABIX_ANNOTATE' {
+    withName: 'ANNOTATION_BGZIPTABIX' {
         publishDir       = [
                 path: { "${params.outdir}/annotation/${meta.id}" },
                 enabled: true,
@@ -359,23 +359,23 @@ process {
 
 if ((params.tools) && (params.tools.contains('snpeff') || params.tools.contains('merge'))) {
     process {
-        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:SNPEFF_ANNOTATE:BGZIPTABIX_ANNOTATE' {
+        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ANNOTATION_SNPEFF:ANNOTATION_BGZIPTABIX' {
             ext.prefix = {"${meta.id}_snpEff.ann.vcf"}
         }
     }
 }
 
 if ((params.tools) && (params.tools.contains('vep'))) {
     process {
-        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ENSEMBLVEP_ANNOTATE:BGZIPTABIX_ANNOTATE' {
+        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:ANNOTATION_ENSEMBLVEP:ANNOTATION_BGZIPTABIX' {
             ext.prefix = {"${meta.id}_VEP.ann.vcf"}
         }
     }
 }
 
 if ((params.tools) && (params.tools.contains('merge'))) {
     process {
-        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:MERGE_ANNOTATE:BGZIPTABIX_ANNOTATE' {
+        withName: 'NFCORE_SAREK:SAREK:ANNOTATE:MERGE_ANNOTATE:ANNOTATION_BGZIPTABIX' {
             ext.prefix = {"${meta.id}_snpEff_VEP.ann.vcf"}
         }
     }