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Remove VCF filtering tools
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adamrtalbot committed May 22, 2023
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Expand Up @@ -51,7 +51,7 @@ Depending on the options and samples provided, the pipeline can currently perfor
- `Control-FREEC`
- `CNVkit`
- `MSIsensor-pro`
- Variant filtering and annotation (`GATK CNNScoreVariants`, `GATK FilterMutectCalls`, `SnpEff`, `Ensembl VEP`)
- Variant filtering and annotation (`SnpEff`, `Ensembl VEP`)
- Summarise and represent QC (`MultiQC`)

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