Removing meta in certain input-channels in call to GATK4_HAPLOTYPECALLER

nf-core · Feb 23, 2024 · 9ab72f2 · 9ab72f2
1 parent 9bb7bb4
commit 9ab72f2
Showing 1 changed file with 4 additions and 4 deletions.
diff --git a/subworkflows/local/bam_variant_calling_haplotypecaller/main.nf b/subworkflows/local/bam_variant_calling_haplotypecaller/main.nf
@@ -32,11 +32,11 @@ workflow BAM_VARIANT_CALLING_HAPLOTYPECALLER {
 
     GATK4_HAPLOTYPECALLER(
         cram_intervals,
-        fasta.map{ it -> [[:], it] },
-        fasta_fai.map{ it -> [[:], it] },
+        fasta,
+        fasta_fai,
         dict,
-        dbsnp.map{ it -> [[:], it] },
-        dbsnp_tbi.map{ it -> [[:], it] })
+        dbsnp,
+        dbsnp_tbi)
 
     // For joint genotyping
     gvcf_tbi_intervals = GATK4_HAPLOTYPECALLER.out.vcf